Miyakogusa Predicted Gene

Lj0g3v0101279.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0101279.1 Non Chatacterized Hit- tr|C5WXC0|C5WXC0_SORBI
Putative uncharacterized protein Sb01g018340
OS=Sorghu,42.59,2e-16,seg,NULL; Katanin_con80,NULL; KATANIN P80
SUBUNIT,Katanin p80 subunit B1,CUFF.5682.1
         (163 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11160.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   192   6e-50
AT1G61210.2 | Symbols:  | Transducin/WD40 repeat-like superfamil...   190   3e-49
AT1G61210.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   190   3e-49
AT5G23430.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   137   4e-33
AT5G23430.2 | Symbols:  | Transducin/WD40 repeat-like superfamil...   130   5e-31
AT5G08390.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   127   3e-30

>AT1G11160.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
            protein | chr1:3733406-3739363 FORWARD LENGTH=1021
          Length = 1021

 Score =  192 bits (489), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 100/162 (61%), Positives = 116/162 (71%)

Query: 1    MQTHDATLSNLRSRLTKLQVVRHFWERNDIKGAINALRKLPDQSVQADVISVLVEKMEIL 60
            M TH+  LS L+SRLTKLQ+VRHFWER+D+KGAI ALRKL DQSVQADVIS+L EK+EIL
Sbjct: 859  MLTHNEFLSTLQSRLTKLQIVRHFWERSDVKGAIGALRKLTDQSVQADVISILTEKIEIL 918

Query: 61   SLDLFSCLFPVLTGLLDSRTERHXXXXXXXXXXXXXXFGPTIRATVSAPPSVGVDLHQEQ 120
            +LD+FS L PVLT LL SRTER               FG  IR+TVSAP  VGVDLH  +
Sbjct: 919  TLDMFSQLVPVLTSLLGSRTERPVNVSLDMLLKLVAVFGTVIRSTVSAPRIVGVDLHANE 978

Query: 121  RRECCNQCFMQLQKTQMVLPILIRRGGLLAKSALELNLVLQQ 162
            R E C  C   L K Q +LP+L RRGGL+ + A ELNLVLQ+
Sbjct: 979  RLEICQICSAGLHKIQRILPVLARRGGLITRKAQELNLVLQE 1020


>AT1G61210.2 | Symbols:  | Transducin/WD40 repeat-like superfamily
            protein | chr1:22564785-22571555 FORWARD LENGTH=1179
          Length = 1179

 Score =  190 bits (483), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 98/161 (60%), Positives = 117/161 (72%)

Query: 1    MQTHDATLSNLRSRLTKLQVVRHFWERNDIKGAINALRKLPDQSVQADVISVLVEKMEIL 60
            M+TH   L+ L+SRLTKLQ+VRHFWER+DIKGAI ALRKL D SVQADVI++L +K EIL
Sbjct: 1017 MRTHSEVLNTLQSRLTKLQIVRHFWERSDIKGAIAALRKLSDHSVQADVINILTDKTEIL 1076

Query: 61   SLDLFSCLFPVLTGLLDSRTERHXXXXXXXXXXXXXXFGPTIRATVSAPPSVGVDLHQEQ 120
            +LDLFS L PVLTGLL S+TER               FG  I++TVSA   VGVDLH E+
Sbjct: 1077 TLDLFSQLAPVLTGLLGSKTERPVNVSLEMLLKLVAVFGTVIQSTVSARRVVGVDLHAEE 1136

Query: 121  RRECCNQCFMQLQKTQMVLPILIRRGGLLAKSALELNLVLQ 161
            R + C  C  +LQK Q +LP+L RRGGL+A+ A ELNLVLQ
Sbjct: 1137 RLQICQSCSAELQKVQKILPLLTRRGGLIARKAQELNLVLQ 1177


>AT1G61210.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
            protein | chr1:22564785-22571555 FORWARD LENGTH=1181
          Length = 1181

 Score =  190 bits (483), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 98/161 (60%), Positives = 117/161 (72%)

Query: 1    MQTHDATLSNLRSRLTKLQVVRHFWERNDIKGAINALRKLPDQSVQADVISVLVEKMEIL 60
            M+TH   L+ L+SRLTKLQ+VRHFWER+DIKGAI ALRKL D SVQADVI++L +K EIL
Sbjct: 1019 MRTHSEVLNTLQSRLTKLQIVRHFWERSDIKGAIAALRKLSDHSVQADVINILTDKTEIL 1078

Query: 61   SLDLFSCLFPVLTGLLDSRTERHXXXXXXXXXXXXXXFGPTIRATVSAPPSVGVDLHQEQ 120
            +LDLFS L PVLTGLL S+TER               FG  I++TVSA   VGVDLH E+
Sbjct: 1079 TLDLFSQLAPVLTGLLGSKTERPVNVSLEMLLKLVAVFGTVIQSTVSARRVVGVDLHAEE 1138

Query: 121  RRECCNQCFMQLQKTQMVLPILIRRGGLLAKSALELNLVLQ 161
            R + C  C  +LQK Q +LP+L RRGGL+A+ A ELNLVLQ
Sbjct: 1139 RLQICQSCSAELQKVQKILPLLTRRGGLIARKAQELNLVLQ 1179


>AT5G23430.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:7894073-7899862 REVERSE LENGTH=837
          Length = 837

 Score =  137 bits (344), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 74/162 (45%), Positives = 108/162 (66%)

Query: 1   MQTHDATLSNLRSRLTKLQVVRHFWERNDIKGAINALRKLPDQSVQADVISVLVEKMEIL 60
           M  H+  +S+++SRL KLQVVR +WERND+K +I ++ K+ D +V ADV+ ++ E+ EIL
Sbjct: 673 MGKHNQFVSSMQSRLAKLQVVRRYWERNDVKNSIGSIEKMADNAVTADVLGIITERNEIL 732

Query: 61  SLDLFSCLFPVLTGLLDSRTERHXXXXXXXXXXXXXXFGPTIRATVSAPPSVGVDLHQEQ 120
           +LD  + L P+LT LL S  ++H              +G  I +++SAP SVGVD+  EQ
Sbjct: 733 TLDNCTSLLPLLTALLGSGMDQHLSVSLDLLLKLVRLYGSPIYSSLSAPASVGVDIEAEQ 792

Query: 121 RRECCNQCFMQLQKTQMVLPILIRRGGLLAKSALELNLVLQQ 162
           R E  ++CF++L+K +  LP L RRGGL+AKS LELNL  Q+
Sbjct: 793 RIERYSRCFVELEKVKACLPSLARRGGLVAKSVLELNLAFQE 834


>AT5G23430.2 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:7894073-7899862 REVERSE LENGTH=836
          Length = 836

 Score =  130 bits (326), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 73/162 (45%), Positives = 107/162 (66%), Gaps = 1/162 (0%)

Query: 1   MQTHDATLSNLRSRLTKLQVVRHFWERNDIKGAINALRKLPDQSVQADVISVLVEKMEIL 60
           M  H+  +S+++SRL KLQVVR +WERND+K +I ++ K+ D +V ADV+ ++ E+ EIL
Sbjct: 673 MGKHNQFVSSMQSRLAKLQVVRRYWERNDVKNSIGSIEKMADNAVTADVLGIITERNEIL 732

Query: 61  SLDLFSCLFPVLTGLLDSRTERHXXXXXXXXXXXXXXFGPTIRATVSAPPSVGVDLHQEQ 120
           +LD  + L P+LT LL S  ++H              +G  I +++SAP SVGVD+  EQ
Sbjct: 733 TLDNCTSLLPLLTALLGSGMDQHLSVSLDLLLKLVRLYGSPIYSSLSAPASVGVDIEAEQ 792

Query: 121 RRECCNQCFMQLQKTQMVLPILIRRGGLLAKSALELNLVLQQ 162
           R E  ++CF++L+K +  LP L  RGGL+AKS LELNL  Q+
Sbjct: 793 RIERYSRCFVELEKVKACLPSLA-RGGLVAKSVLELNLAFQE 833


>AT5G08390.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:2701448-2706910 FORWARD LENGTH=839
          Length = 839

 Score =  127 bits (319), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/162 (44%), Positives = 103/162 (63%)

Query: 1   MQTHDATLSNLRSRLTKLQVVRHFWERNDIKGAINALRKLPDQSVQADVISVLVEKMEIL 60
           M  HD  +S++ SRL KLQVVR +WERNDIK +I+++ K+ D +V ADV+ ++ E+ EIL
Sbjct: 675 MGQHDQFVSSMHSRLAKLQVVRRYWERNDIKNSISSIEKMADNAVIADVLLIVNERPEIL 734

Query: 61  SLDLFSCLFPVLTGLLDSRTERHXXXXXXXXXXXXXXFGPTIRATVSAPPSVGVDLHQEQ 120
           +LD  + L P+LT LL S  + H              +G  I +++SAP SVGVD+  EQ
Sbjct: 735 TLDTCTSLLPLLTALLGSNMDSHLSVCLDLLLKLVRMYGSQIYSSLSAPSSVGVDIEAEQ 794

Query: 121 RRECCNQCFMQLQKTQMVLPILIRRGGLLAKSALELNLVLQQ 162
           R E  + CF++ +K +  LP L RRG L+AK+  ELNL  Q+
Sbjct: 795 RMERYSCCFVEFEKIKACLPSLARRGNLVAKTLHELNLTFQE 836