Miyakogusa Predicted Gene

Lj0g3v0101189.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0101189.1 tr|B9GFW3|B9GFW3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_752856 PE=4
SV=1,27.83,4e-18,seg,NULL; coiled-coil,NULL,CUFF.5673.1
         (1084 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G04235.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   241   2e-63

>AT2G04235.1 | Symbols:  | unknown protein; FUNCTIONS IN:
            molecular_function unknown; INVOLVED IN:
            biological_process unknown; LOCATED IN:
            cellular_component unknown; EXPRESSED IN: cultured cell;
            Has 713 Blast hits to 345 proteins in 122 species: Archae
            - 2; Bacteria - 262; Metazoa - 138; Fungi - 55; Plants -
            39; Viruses - 0; Other Eukaryotes - 217 (source: NCBI
            BLink). | chr2:1449414-1455018 FORWARD LENGTH=1253
          Length = 1253

 Score =  241 bits (614), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/408 (36%), Positives = 222/408 (54%), Gaps = 12/408 (2%)

Query: 681  KFSVSTKQLLSPSVDKLNLRLISKLEDILVHLQKAKKWDILCSEIQSQKSTDPLNIPGQR 740
            K S    Q+L+P  DKLN RLI KLEDIL H++K    ++LC +IQSQK  D L+    +
Sbjct: 844  KVSKEINQMLAPLADKLNSRLICKLEDILTHMKKVHLCEMLCLQIQSQKVCDHLSGAKTK 903

Query: 741  RIVETRMLLINIAYEKAKLQLMHMKRERLTKKLQQLSSGLQEAQMMKNVIPCSTKIGSIN 800
            R VE+R LL  +AY+KAKL+L+H+K+E + KK Q +S+G+Q ++ ++  + C+  +    
Sbjct: 904  RRVESRSLLCKLAYDKAKLELLHLKKEIMMKKFQAVSTGVQTSETLR--LNCANFLRQHG 961

Query: 801  IRAD-----DSHTQV---SSEMEKRLELESLDWKAKSLIEFFYNNCKMEGDRTC-SDTIK 851
             R+      D   +V       E   E++ +D K K+LI+ F     M G +   +DTI 
Sbjct: 962  FRSTGLLNPDQAQEVIITGKRAEITQEIKEIDSKIKNLIQCFTACDTMTGPQPAYADTIM 1021

Query: 852  SVHDYLLKRMSYKCIFQNLKLWNIEDFERKDGCFKILLNYCDYITQRFTXXXXXXXXXXX 911
               + L KRMS + + Q++ +W ++     + C  I+LNY     QR T           
Sbjct: 1022 IAEETLKKRMSCRSLRQDILIWKVDSLGEWNDCQSIVLNYSGVFNQRLTLKPGHPSCVLV 1081

Query: 912  XXXXXXXXRKTFPNMDAFSAFLFVLNPHTNKK-CPGQISLAQETQITSSLISNLLYVAEE 970
                     K FP M+   AF  + N   +++   G  +L + TQ TS L+ NLL VAEE
Sbjct: 1082 SNSLSDTFVKHFPEMNVSIAFNSMFNAEDSRRYIGGSNTLLEITQKTSLLLHNLLDVAEE 1141

Query: 971  VQLAQIEIRNLVHAKFYSRSVHQLDLQLLFIDFCSGKKVQVTLDMTCLKCGAYPVEVLPC 1030
              LAQ+ I NLV   F S S  QL LQ+ F+D  + +K+ V LD+TCL  G YP +V+PC
Sbjct: 1142 FHLAQMNIPNLVQGNFDSPSAEQLHLQISFLDCTNLRKLSVILDVTCLIHGKYPSDVVPC 1201

Query: 1031 QIHDPSASGEQKPLPASLVDKITTAAVNERVGFSRIIRLCKCISKAVQ 1078
            +    S +     +   L  +I +   +  VG+ RI+RLC+CISKA+Q
Sbjct: 1202 EFRKVSGTKRDGVVSKQLKKEIESTIDDVGVGYPRILRLCRCISKALQ 1249



 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 67/107 (62%), Gaps = 4/107 (3%)

Query: 1   MDSTAFSIHYRSLARSESGDLKTPTRFGLLXXXXX-XXXXXXXXXXXLMDLTNPEKT--Q 57
           MDSTAFS+H+RSLARSESGD++TPT   LL                  M LT P+K   +
Sbjct: 186 MDSTAFSMHFRSLARSESGDVRTPTSSHLLVEEKTPTEVTSRSDTGSAMVLTEPKKLFPK 245

Query: 58  SLVSATE-SGGGDSNDMSLVEEHPKSYNFGRLSPRLLAILGEGSKDF 103
           S V   + SGG DSNDMS+V E+ + Y++G LSP L A++G+ SK+ 
Sbjct: 246 SPVPVDKGSGGRDSNDMSIVGENSRRYDYGYLSPTLAALMGDESKEL 292