Miyakogusa Predicted Gene

Lj0g3v0101139.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0101139.2 tr|G7JIC6|G7JIC6_MEDTR Replication factor A
protein OS=Medicago truncatula GN=MTR_4g028320 PE=4
SV=1,28.19,0.000000000009,Nucleic acid-binding proteins,Nucleic
acid-binding, OB-fold-like; no description,Nucleic
acid-bindin,CUFF.5671.2
         (304 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G19130.1 | Symbols:  | Replication factor-A protein 1-related...    54   1e-07
AT5G45400.1 | Symbols: RPA70C, ATRPA70C | Replication factor-A p...    53   2e-07

>AT4G19130.1 | Symbols:  | Replication factor-A protein 1-related |
           chr4:10466618-10469092 REVERSE LENGTH=784
          Length = 784

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 96/195 (49%), Gaps = 10/195 (5%)

Query: 13  GKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPL- 71
           G+I+ +   A+  ++ D+ V GN+Y I   ++ PA+ ++    + Y I+    + +    
Sbjct: 276 GEIRVTCFNAVADQFYDQIVVGNLYLISRGSLRPAQKNFNHLRNDYEIMLDNASTIKQCY 335

Query: 72  -ECESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSP-VRIDVKGSSHVKIMMMEL 129
            E  +IPR      T   +E++ +  + +VDV+G ++++SP V I  K  +      ++L
Sbjct: 336 EEDAAIPRHQFHFRTIGDIESMEN--NCIVDVIGIVSSISPTVTITRKNGTATPKRSLQL 393

Query: 130 YDENG-SMSFVVLGDCVSVVSDYLSSHSKEK--PLVVVQYAKIKKFEGKNLLHTLIPVST 186
            D +G S+   + GD  +     L S       P++ V+  +I +F GK +  + I  S 
Sbjct: 394 KDMSGRSVEVTMWGDFCNAEGQRLQSLCDSGVFPVLAVKAGRISEFNGKTV--STIGSSQ 451

Query: 187 IHLNQEFEEAKAFRK 201
           + ++ +F EA+  + 
Sbjct: 452 LFIDPDFVEAEKLKN 466


>AT5G45400.1 | Symbols: RPA70C, ATRPA70C | Replication factor-A
           protein 1-related | chr5:18398990-18401644 FORWARD
           LENGTH=853
          Length = 853

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 9/194 (4%)

Query: 13  GKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLE 72
           G+I+ +       ++ DK V GNVY I   N+ PA+ ++    + Y I     + + P E
Sbjct: 347 GEIRVTCFNDAVDQFFDKIVVGNVYLISRGNLKPAQKNFNHLPNDYEIHLDSASTIQPCE 406

Query: 73  CE-SIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSP-VRIDVKGSSHVKIMMMELY 130
            + +IPR          +E + + S    DV+G ++++SP V I  K  + V+   ++L 
Sbjct: 407 DDGTIPRYHFHFRNIGDIENMENNS--TTDVIGIVSSISPTVAIMRKNLTEVQKRSLQLK 464

Query: 131 DENG-SMSFVVLGDCVSVVSDYLSSHSKEK--PLVVVQYAKIKKFEGKNLLHTLIPVSTI 187
           D +G S+   + G+  +     L +       P++ ++  +I +F GK +  + I  S  
Sbjct: 465 DMSGRSVEVTMWGNFCNAEGQKLQNLCDSGVFPVLALKAGRIGEFNGKQV--STIGASQF 522

Query: 188 HLNQEFEEAKAFRK 201
            +  +F EA+  R+
Sbjct: 523 FIEPDFPEARELRQ 536