Miyakogusa Predicted Gene

Lj0g3v0101139.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0101139.1 tr|G7JIC6|G7JIC6_MEDTR Replication factor A
protein OS=Medicago truncatula GN=MTR_4g028320 PE=4
SV=1,29.68,5e-18,Nucleic acid-binding proteins,Nucleic acid-binding,
OB-fold-like; seg,NULL; no description,Nucleic a,CUFF.5671.1
         (345 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G19130.1 | Symbols:  | Replication factor-A protein 1-related...    56   3e-08
AT5G45400.1 | Symbols: RPA70C, ATRPA70C | Replication factor-A p...    55   7e-08
AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    52   6e-07
AT5G08020.1 | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B | ...    50   2e-06

>AT4G19130.1 | Symbols:  | Replication factor-A protein 1-related |
           chr4:10466618-10469092 REVERSE LENGTH=784
          Length = 784

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 99/200 (49%), Gaps = 10/200 (5%)

Query: 48  FMDEQEGKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKT 107
            +D   G+I+ +   A+  ++ D+ V GN+Y I   ++ PA+ ++    + Y I+    +
Sbjct: 270 LLDADGGEIRVTCFNAVADQFYDQIVVGNLYLISRGSLRPAQKNFNHLRNDYEIMLDNAS 329

Query: 108 KVVPL--ECESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSP-VRIDVKGSSHVK 164
            +     E  +IPR      T   +E++ +  + +VDV+G ++++SP V I  K  +   
Sbjct: 330 TIKQCYEEDAAIPRHQFHFRTIGDIESMEN--NCIVDVIGIVSSISPTVTITRKNGTATP 387

Query: 165 IMMMELYDENG-SMSFVVLGDCVSVVSDYLSS--HSKEKPLVVVQYAKIKKFEGKNLLHT 221
              ++L D +G S+   + GD  +     L S   S   P++ V+  +I +F GK +  +
Sbjct: 388 KRSLQLKDMSGRSVEVTMWGDFCNAEGQRLQSLCDSGVFPVLAVKAGRISEFNGKTV--S 445

Query: 222 LIPVSTIHLNQEFEEAKAFR 241
            I  S + ++ +F EA+  +
Sbjct: 446 TIGSSQLFIDPDFVEAEKLK 465


>AT5G45400.1 | Symbols: RPA70C, ATRPA70C | Replication factor-A
           protein 1-related | chr5:18398990-18401644 FORWARD
           LENGTH=853
          Length = 853

 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 95/200 (47%), Gaps = 9/200 (4%)

Query: 48  FMDEQEGKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKT 107
            +D   G+I+ +       ++ DK V GNVY I   N+ PA+ ++    + Y I     +
Sbjct: 341 LLDADGGEIRVTCFNDAVDQFFDKIVVGNVYLISRGNLKPAQKNFNHLPNDYEIHLDSAS 400

Query: 108 KVVPLECE-SIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSP-VRIDVKGSSHVKI 165
            + P E + +IPR          +E + + S    DV+G ++++SP V I  K  + V+ 
Sbjct: 401 TIQPCEDDGTIPRYHFHFRNIGDIENMENNS--TTDVIGIVSSISPTVAIMRKNLTEVQK 458

Query: 166 MMMELYDENG-SMSFVVLGDCVSVVSDYLSS--HSKEKPLVVVQYAKIKKFEGKNLLHTL 222
             ++L D +G S+   + G+  +     L +   S   P++ ++  +I +F GK +  + 
Sbjct: 459 RSLQLKDMSGRSVEVTMWGNFCNAEGQKLQNLCDSGVFPVLALKAGRIGEFNGKQV--ST 516

Query: 223 IPVSTIHLNQEFEEAKAFRK 242
           I  S   +  +F EA+  R+
Sbjct: 517 IGASQFFIEPDFPEARELRQ 536


>AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr2:2098253-2100867 REVERSE LENGTH=532
          Length = 532

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 44/72 (61%)

Query: 42  ISLEMVFMDEQEGKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRI 101
           + ++++ +D++  +IQAS+   +  K+ +K  EG+ Y I  F +    GSYRA++H Y+I
Sbjct: 40  MGIDLLLVDDKGERIQASIRSQLLSKFQEKLEEGDCYMIMNFEISDNGGSYRASSHPYKI 99

Query: 102 LFSGKTKVVPLE 113
            F   T ++ ++
Sbjct: 100 NFMSMTHIIGMQ 111


>AT5G08020.1 | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B |
           chr5:2572107-2574879 FORWARD LENGTH=604
          Length = 604

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 8/208 (3%)

Query: 48  FMDEQEGKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKT 107
             DE+  +IQA++  A  RK+ D+F  G VY I   ++  A   ++   + Y +  +  +
Sbjct: 199 LTDEEGTQIQATMFNAAARKFYDRFEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENS 258

Query: 108 KVVPLECESI--PRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPV-RIDVKGSSH-V 163
           +V     E +  P    + V   +L T  +  D L+DV+G + +VSP   I  K  +  +
Sbjct: 259 EVEEASNEEMFTPETKFNFVPIDELGTYVNQKD-LIDVIGVVQSVSPTMSIRRKNDNEMI 317

Query: 164 KIMMMELYDENGSMSFVVL-GDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTL 222
               + L DE      V L  D  + +   L   +   P++ ++  K+  F+G +L  + 
Sbjct: 318 PKRDITLADETKKTVVVSLWNDLATGIGQELLDMADNHPVIAIKSLKVGAFQGVSL--ST 375

Query: 223 IPVSTIHLNQEFEEAKAFRKRMNGHSRE 250
           I  S + +N    EA   +   +   +E
Sbjct: 376 ISRSNVVINPNSPEATKLKSWYDAEGKE 403