Miyakogusa Predicted Gene

Lj0g3v0100959.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0100959.1 tr|A9T0I3|A9T0I3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_234584,25.61,2e-18,RETICULON-RELATED (PLANT),NULL;
RETICULON,Reticulon; seg,NULL; Reticulon,Reticulon,CUFF.5655.1
         (460 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20590.1 | Symbols:  | Reticulon family protein | chr2:886724...   252   3e-67
AT4G28430.1 | Symbols:  | Reticulon family protein | chr4:140578...   239   2e-63
AT2G20590.2 | Symbols:  | Reticulon family protein | chr2:886778...   190   1e-48
AT5G58000.1 | Symbols:  | Reticulon family protein | chr5:234774...   130   1e-30

>AT2G20590.1 | Symbols:  | Reticulon family protein |
           chr2:8867243-8869166 REVERSE LENGTH=431
          Length = 431

 Score =  252 bits (644), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 151/333 (45%), Positives = 199/333 (59%), Gaps = 17/333 (5%)

Query: 123 ELLLMSPSPARKSKPRFDDELL----EAGSGVRRRCKSRGAQMGLLCSPXXXXXX----- 173
           ++LL+ PSP RKS+ R  D L     +A + VR+R K +G Q  LL SP           
Sbjct: 49  DILLLPPSPLRKSRTRLSDRLEMTSEDAMAVVRKRGKGKGGQKSLLASPRNPRRSRRRSE 108

Query: 174 XXEEKEVGLVVDEAGK--QRKRRHSGRPRKEKLSLVXXXXXXXXXXXXXXEEETGGDLDR 231
             EEKE  LV++E  K   RKR+ +GRP+K+K S                      DL+ 
Sbjct: 109 AVEEKEANLVIEEIVKLPPRKRKTNGRPKKDKQS-----SAPPLCSSSDLPNTCQSDLNL 163

Query: 232 VGQFITDLIMWRDVSKSAXXXXXXXXXXXXXXXTKGVNFSIFSALCQLAIXXXXXXXXXX 291
           +G+ I+DL+MWRDV+KS                 KGVNFS+FSA+  L +          
Sbjct: 164 IGEIISDLVMWRDVAKSTLWFGFGCLSFLSSCFAKGVNFSVFSAVSNLGLVLLCGSFLSN 223

Query: 292 XVSQRDQAEKGYA-KLKEDDILRLTNLILPAFNLAISKTRELFSGEPSITLKLAPFLLLG 350
            + QR   +   A  + EDD+LR    +LPA N  ISKT ELFSGEPS+TLK+ PFLLLG
Sbjct: 224 TLCQRKNEDTKRAFHVSEDDVLRSARRVLPATNFFISKTSELFSGEPSMTLKVTPFLLLG 283

Query: 351 AEYGSLITIWRLSAIGFFVSFSVPKLYSCYSDQINQRAKCLKLRLLDRWSACPHKKIVVA 410
           AEYG LIT+WRLSA GFF+SF++PKLYSCY+ QI+Q+ + +K R+ + W  C HKKI+  
Sbjct: 284 AEYGHLITLWRLSAFGFFLSFTIPKLYSCYTHQISQKVERVKTRIGEAWGVCSHKKILAG 343

Query: 411 SALIAFWKLSTIKTRIFTGFILLVIARYCRQNV 443
           SA+ AFW L++I+TRIF  FI+LVI RY RQN+
Sbjct: 344 SAVTAFWNLTSIRTRIFAVFIILVIFRYRRQNL 376


>AT4G28430.1 | Symbols:  | Reticulon family protein |
           chr4:14057846-14059772 FORWARD LENGTH=457
          Length = 457

 Score =  239 bits (611), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 147/340 (43%), Positives = 200/340 (58%), Gaps = 21/340 (6%)

Query: 123 ELLLMSPSPARKSKPR----FDDELLEAGSGVRRRCKSRGAQMGLLCSPX--------XX 170
           E+LL+SPSP RKS+ R    FD E  EA    RR  K++G Q GLL SP           
Sbjct: 67  EILLLSPSPLRKSRTRLSNRFDMEAAEAAVTARR-SKTKGGQNGLLASPSPRNFRRSRLR 125

Query: 171 XXXXXEEKE----VGLVVDEAGKQRKRRHS-GRPRKEKLSLVXXXXXXXXXXXXXXEEET 225
                + KE    + +V DE  + ++++   GR +KEK S V              ++  
Sbjct: 126 SEAMVDTKENTEPIVVVTDEKKQNQRKQKKLGRSKKEKHSSVPLLASPSPSSDQP-QDVC 184

Query: 226 GGDLDRVGQFITDLIMWRDVSKSAX-XXXXXXXXXXXXXXTKGVNFSIFSALCQLAIXXX 284
            GDL+R+ + I+DLIMWRDV+KS                  KG NFS+FSA+  L +   
Sbjct: 185 QGDLERIRENISDLIMWRDVAKSTLWFGFGCICFLSTCFAAKGFNFSVFSAISYLGLLFL 244

Query: 285 XXXXXXXXVSQRDQAE-KGYAKLKEDDILRLTNLILPAFNLAISKTRELFSGEPSITLKL 343
                   + QR   E +   KL EDD+LR+   +LP  NLAISKT ELFSGEP++TLK+
Sbjct: 245 GVSFLSNTLRQRVTEEARRELKLSEDDVLRIARRMLPITNLAISKTSELFSGEPAMTLKV 304

Query: 344 APFLLLGAEYGSLITIWRLSAIGFFVSFSVPKLYSCYSDQINQRAKCLKLRLLDRWSACP 403
           APF+L+GAEYG LIT+WRL A GFF+SF++PKLYSCY+ Q+NQ+ +C + R ++ W  C 
Sbjct: 305 APFVLMGAEYGYLITLWRLCAFGFFLSFTIPKLYSCYASQLNQKVECAQRRFVEAWGVCT 364

Query: 404 HKKIVVASALIAFWKLSTIKTRIFTGFILLVIARYCRQNV 443
           HKK V  SA+ AFW L+++KTR    FI++V+ RY RQN+
Sbjct: 365 HKKFVAGSAVTAFWNLTSLKTRFIAVFIIVVVIRYRRQNL 404


>AT2G20590.2 | Symbols:  | Reticulon family protein |
           chr2:8867781-8869166 REVERSE LENGTH=323
          Length = 323

 Score =  190 bits (483), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/279 (43%), Positives = 160/279 (57%), Gaps = 17/279 (6%)

Query: 123 ELLLMSPSPARKSKPRFDDELL----EAGSGVRRRCKSRGAQMGLLCSPXXXXXX----- 173
           ++LL+ PSP RKS+ R  D L     +A + VR+R K +G Q  LL SP           
Sbjct: 49  DILLLPPSPLRKSRTRLSDRLEMTSEDAMAVVRKRGKGKGGQKSLLASPRNPRRSRRRSE 108

Query: 174 XXEEKEVGLVVDEAGK--QRKRRHSGRPRKEKLSLVXXXXXXXXXXXXXXEEETGGDLDR 231
             EEKE  LV++E  K   RKR+ +GRP+K+K S                      DL+ 
Sbjct: 109 AVEEKEANLVIEEIVKLPPRKRKTNGRPKKDKQS-----SAPPLCSSSDLPNTCQSDLNL 163

Query: 232 VGQFITDLIMWRDVSKSAXXXXXXXXXXXXXXXTKGVNFSIFSALCQLAIXXXXXXXXXX 291
           +G+ I+DL+MWRDV+KS                 KGVNFS+FSA+  L +          
Sbjct: 164 IGEIISDLVMWRDVAKSTLWFGFGCLSFLSSCFAKGVNFSVFSAVSNLGLVLLCGSFLSN 223

Query: 292 XVSQRDQAEKGYA-KLKEDDILRLTNLILPAFNLAISKTRELFSGEPSITLKLAPFLLLG 350
            + QR   +   A  + EDD+LR    +LPA N  ISKT ELFSGEPS+TLK+ PFLLLG
Sbjct: 224 TLCQRKNEDTKRAFHVSEDDVLRSARRVLPATNFFISKTSELFSGEPSMTLKVTPFLLLG 283

Query: 351 AEYGSLITIWRLSAIGFFVSFSVPKLYSCYSDQINQRAK 389
           AEYG LIT+WRLSA GFF+SF++PKLYSCY+ QI+Q+ +
Sbjct: 284 AEYGHLITLWRLSAFGFFLSFTIPKLYSCYTHQISQKGE 322


>AT5G58000.1 | Symbols:  | Reticulon family protein |
           chr5:23477416-23479496 FORWARD LENGTH=487
          Length = 487

 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 3/214 (1%)

Query: 234 QFITDLIMWRDVSKSAXXXXXXXXXXXXXXXTKGVNFSIFSALCQLAIXXXXXXXXXXXV 293
           Q + DL+MWRDVS+S                   +NFS  S +  + +           +
Sbjct: 228 QSLVDLVMWRDVSRSTLVFGFGTFLIISSSYANDLNFSFISVVAYMGLIYLGLMFVLKSL 287

Query: 294 SQRDQAEKGYAKL---KEDDILRLTNLILPAFNLAISKTRELFSGEPSITLKLAPFLLLG 350
             R   E+   K+   +E+D+ R+  LI+P  N ++ + R LFSG+PS TLK+   L + 
Sbjct: 288 IHRGMVEEERHKVVGVREEDVKRMLRLIMPYLNESLHQLRALFSGDPSTTLKMGVVLFVL 347

Query: 351 AEYGSLITIWRLSAIGFFVSFSVPKLYSCYSDQINQRAKCLKLRLLDRWSACPHKKIVVA 410
           A  GS IT+W L+  GF  +F++PK++  YS   +        R  D W +C HKK V  
Sbjct: 348 ARCGSSITLWNLAKFGFLGAFTIPKIFISYSTHFSAYGNFWMRRFRDAWESCNHKKAVAL 407

Query: 411 SALIAFWKLSTIKTRIFTGFILLVIARYCRQNVM 444
           +     W LS++  R++  F+LLV  RY +  ++
Sbjct: 408 ALFTLVWNLSSVTARVWAAFMLLVAFRYYQHKMI 441