Miyakogusa Predicted Gene

Lj0g3v0100879.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0100879.1 Non Chatacterized Hit- tr|D8RPU9|D8RPU9_SELML
Putative uncharacterized protein OS=Selaginella
moelle,41.03,7e-19,BSD,BSD; domain in transcription factors and
synapse-,BSD; BSD domain-like,NULL,CUFF.5653.1
         (181 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24820.1 | Symbols:  | BSD domain-containing protein | chr3:9...   168   2e-42
AT1G69030.1 | Symbols:  | BSD domain-containing protein | chr1:2...   120   4e-28
AT1G26300.1 | Symbols:  | BSD domain-containing protein | chr1:9...   114   4e-26
AT1G26300.2 | Symbols:  | BSD domain-containing protein | chr1:9...   107   5e-24
AT5G65910.1 | Symbols:  | BSD domain-containing protein | chr5:2...    51   5e-07
AT3G49800.1 | Symbols:  | BSD domain-containing protein | chr3:1...    47   7e-06

>AT3G24820.1 | Symbols:  | BSD domain-containing protein |
           chr3:9062717-9064366 REVERSE LENGTH=186
          Length = 186

 Score =  168 bits (425), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 122/182 (67%), Gaps = 8/182 (4%)

Query: 5   LRRSLSRSPRNGETSKTQTQSNTKEQDQQQQQHMFGITEELINLVKSFTIDTFKNFPLQD 64
           +RRS  R  +  E+S   +  N     ++ +  + G+T+ELI+ V+SFTIDTFKNF L+D
Sbjct: 7   IRRSFLREKK--ESSDGNSLKNGSSVKEEGKDEILGVTDELIDHVRSFTIDTFKNFSLED 64

Query: 65  EDQAT----YGEEAQS-TTSTKVRKDLSQWQERHAVLVLSSVKELSQLRFVLCPRHLKEN 119
           E++       G+E    ++S  V+KDLS WQE+HAVLVLS  KELSQLRF LCPR LKE+
Sbjct: 65  EEEEVSVNPLGDEDNGMSSSANVKKDLSDWQEKHAVLVLSKSKELSQLRFKLCPRVLKEH 124

Query: 120 EFWRIYFILTRSHIAEYELRAIQQEKLKRMATEDEKSS-NNSLYEIEMAEAKHGSIIEPL 178
           +FWRIYF L R  +A+YE+ AIQQ +++RMA ED K+S +  +YE+EM+E K      P 
Sbjct: 125 QFWRIYFQLVRKIVAKYEVLAIQQAQIRRMAMEDSKTSESKGVYEVEMSETKQRLSTGPA 184

Query: 179 PP 180
            P
Sbjct: 185 TP 186


>AT1G69030.1 | Symbols:  | BSD domain-containing protein |
           chr1:25947429-25949262 REVERSE LENGTH=317
          Length = 317

 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/130 (46%), Positives = 84/130 (64%), Gaps = 3/130 (2%)

Query: 39  FGITEELINLVKSFTIDTFKNFPLQDEDQATYGEEAQSTTSTKVRKDLSQWQERHAVLVL 98
           FGIT++L   VK  T  TF+ FP QDE       E   T+++ VRKDLS+WQERHA LVL
Sbjct: 128 FGITDDLREFVKGLTSATFQAFPEQDESSEVSDLE---TSASNVRKDLSEWQERHATLVL 184

Query: 99  SSVKELSQLRFVLCPRHLKENEFWRIYFILTRSHIAEYELRAIQQEKLKRMATEDEKSSN 158
            SVK++S+LR+ LCPR +KE  FWRIYF L  +H+A YE + +++ + K  + ++E   +
Sbjct: 185 GSVKQISKLRYELCPRVMKERRFWRIYFTLVSTHVAPYERKYMEELRNKAESKDEEAKKS 244

Query: 159 NSLYEIEMAE 168
             L   E AE
Sbjct: 245 PGLGRTESAE 254


>AT1G26300.1 | Symbols:  | BSD domain-containing protein |
           chr1:9096023-9099746 REVERSE LENGTH=316
          Length = 316

 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 53/111 (47%), Positives = 75/111 (67%), Gaps = 7/111 (6%)

Query: 39  FGITEELINLVKSFTIDTFKNFPLQDEDQATYGEEAQS--TTSTKVRKDLSQWQERHAVL 96
           FG+T++L    +  T  TF+ FP QD+     G+E     T ++ VRKDLS WQERHA L
Sbjct: 120 FGVTDDLREFAEGLTSATFQAFPDQDQ-----GDEVSDVITNASNVRKDLSDWQERHATL 174

Query: 97  VLSSVKELSQLRFVLCPRHLKENEFWRIYFILTRSHIAEYELRAIQQEKLK 147
           VL+SVK++S+LR+ LCPR +KE  FWRIYF L  +H++ YE + +++ K K
Sbjct: 175 VLTSVKQISKLRYELCPRFMKERRFWRIYFTLVSTHVSPYERKYMEELKTK 225


>AT1G26300.2 | Symbols:  | BSD domain-containing protein |
           chr1:9098937-9099746 REVERSE LENGTH=213
          Length = 213

 Score =  107 bits (266), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 67/98 (68%), Gaps = 7/98 (7%)

Query: 39  FGITEELINLVKSFTIDTFKNFPLQDEDQATYGEEAQS--TTSTKVRKDLSQWQERHAVL 96
           FG+T++L    +  T  TF+ FP QD+     G+E     T ++ VRKDLS WQERHA L
Sbjct: 120 FGVTDDLREFAEGLTSATFQAFPDQDQ-----GDEVSDVITNASNVRKDLSDWQERHATL 174

Query: 97  VLSSVKELSQLRFVLCPRHLKENEFWRIYFILTRSHIA 134
           VL+SVK++S+LR+ LCPR +KE  FWRIYF L  +H++
Sbjct: 175 VLTSVKQISKLRYELCPRFMKERRFWRIYFTLVSTHVS 212


>AT5G65910.1 | Symbols:  | BSD domain-containing protein |
           chr5:26361592-26363341 REVERSE LENGTH=432
          Length = 432

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 16/149 (10%)

Query: 38  MFGITEELINLVKSFTIDTFKNFPLQDEDQATYGEEAQSTTSTKVRKDLSQWQERHAVLV 97
           + G+TEEL+  VK   +            +            +    +L+  Q  HA+ V
Sbjct: 142 VIGVTEELVAFVKDLAM----------HPETWLDFPLPDDDDSFDDFELADAQYEHALAV 191

Query: 98  LSSVKELSQLRFVLCPRHLKENEFWRIYFILTRSHIAEYE---LRAIQQEKLKRMATEDE 154
                 L+ LR  LCP ++ EN FWRIYF+L    +++     L   Q  + + M +++ 
Sbjct: 192 ERLAPSLASLRIELCPEYMTENCFWRIYFVLVHPKLSKDHALLLSTPQVLEARSMLSQEL 251

Query: 155 KSSNNSLYEIEMAEAKHGSIIEPL--PPS 181
           +  +    E   +EA +  I+EPL  PPS
Sbjct: 252 QKRSKLPVEAGSSEA-NTVIVEPLTVPPS 279


>AT3G49800.1 | Symbols:  | BSD domain-containing protein |
           chr3:18471957-18473676 REVERSE LENGTH=428
          Length = 428

 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 14/103 (13%)

Query: 37  HMFGITEELINLVKSFTI--DTFKNFPLQDEDQATYGEEAQSTTSTKVRKDLSQWQERHA 94
           +  G+TEE++   +   +  +T+ +FP                       +++  Q  HA
Sbjct: 161 NAIGVTEEVVLFARDLALHPETWLDFPFP------------DEDDNFDDFEMTDAQYEHA 208

Query: 95  VLVLSSVKELSQLRFVLCPRHLKENEFWRIYFILTRSHIAEYE 137
           + V +    L+ LR  LCP ++ E  FWRIYF+L     ++++
Sbjct: 209 LAVENLASSLAALRIELCPAYMSEYCFWRIYFVLVHPIFSKHD 251