Miyakogusa Predicted Gene

Lj0g3v0100119.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0100119.1 Non Chatacterized Hit- tr|G7JAN8|G7JAN8_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,61.02,0.000000000000007,Myb_DNA-bind_3,Myb/SANT-like
domain,NODE_72594_length_213_cov_93.793427.path2.1
         (59 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05800.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    57   3e-09
AT5G05800.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    57   3e-09
AT3G11290.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    46   6e-06

>AT5G05800.2 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN:
          cellular_component unknown; EXPRESSED IN: 24 plant
          structures; EXPRESSED DURING: 15 growth stages; BEST
          Arabidopsis thaliana protein match is: unknown protein
          (TAIR:AT3G11290.1); Has 881 Blast hits to 512 proteins
          in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0;
          Fungi - 38; Plants - 833; Viruses - 0; Other Eukaryotes
          - 8 (source: NCBI BLink). | chr5:1743234-1744751
          REVERSE LENGTH=449
          Length = 449

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 7  KASWPPAIHKAFVDVCLREMMKMNEPGTRIAKVNWRNIVGSFYAKTGVRYTK 58
          KA W P  H+ FVD+C+ + M  N+PGT  +K  WRNI+ SF  +TG  Y +
Sbjct: 4  KAVWEPEYHRVFVDLCVEQTMLGNKPGTHFSKEGWRNILISFQEQTGAMYDR 55



 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 2   SSTP-AKASWPPAIHKAFVDVCLREMMKMNEPGTRIAKVNWRNIVGSFYAKTGVRYTK 58
           SS P  K  W P+ HK F+D+ ++E +K N P T   K  W+ I+G+    TG+ YT+
Sbjct: 161 SSNPQTKGYWSPSTHKLFLDLLVQETLKGNRPDTHFNKEGWKTILGTINENTGLGYTR 218


>AT5G05800.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT3G11290.1); Has 1807 Blast hits to 1807
          proteins in 277 species: Archae - 0; Bacteria - 0;
          Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
          Other Eukaryotes - 339 (source: NCBI BLink). |
          chr5:1743234-1744751 REVERSE LENGTH=449
          Length = 449

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 7  KASWPPAIHKAFVDVCLREMMKMNEPGTRIAKVNWRNIVGSFYAKTGVRYTK 58
          KA W P  H+ FVD+C+ + M  N+PGT  +K  WRNI+ SF  +TG  Y +
Sbjct: 4  KAVWEPEYHRVFVDLCVEQTMLGNKPGTHFSKEGWRNILISFQEQTGAMYDR 55



 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 2   SSTP-AKASWPPAIHKAFVDVCLREMMKMNEPGTRIAKVNWRNIVGSFYAKTGVRYTK 58
           SS P  K  W P+ HK F+D+ ++E +K N P T   K  W+ I+G+    TG+ YT+
Sbjct: 161 SSNPQTKGYWSPSTHKLFLDLLVQETLKGNRPDTHFNKEGWKTILGTINENTGLGYTR 218


>AT3G11290.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT3G11310.1); Has 720 Blast hits to 435 proteins
          in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0;
          Fungi - 32; Plants - 682; Viruses - 0; Other Eukaryotes
          - 4 (source: NCBI BLink). | chr3:3535766-3537295
          REVERSE LENGTH=460
          Length = 460

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 7/52 (13%)

Query: 7  KASWPPAIHKAFVDVCLREMMKMNEPGTRIAKVNWRNIVGSFYAKTGVRYTK 58
          KA+W P  H+ FVD+C+ + M  N+PGT       ++I+  F  +TG R+T+
Sbjct: 4  KAAWEPEYHRVFVDLCVEQKMLGNQPGT-------QHILKPFLQRTGARFTR 48