Miyakogusa Predicted Gene

Lj0g3v0099979.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0099979.1 tr|Q45FY8|Q45FY8_SOYBN Coronatine-insensitive 1
OS=Glycine max GN=COI1 PE=2 SV=1,84.13,0,no description,NULL;
SUBFAMILY NOT NAMED,NULL; F-BOX/LEUCINE RICH REPEAT PROTEIN,NULL;
seg,NULL; RNI,NODE_23691_length_2064_cov_198.769379.path3.1
         (322 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39940.1 | Symbols: COI1 | RNI-like superfamily protein | chr...   369   e-102
AT3G62980.1 | Symbols: TIR1 | F-box/RNI-like superfamily protein...   183   2e-46
AT4G03190.1 | Symbols: GRH1, ATGRH1, AFB1 | GRR1-like protein 1 ...   180   1e-45
AT1G12820.1 | Symbols: AFB3 | auxin signaling F-box 3 | chr1:436...   169   2e-42
AT3G26810.1 | Symbols: AFB2 | auxin signaling F-box 2 | chr3:986...   166   2e-41
AT5G49980.1 | Symbols: AFB5 | auxin F-box protein 5 | chr5:20334...   157   1e-38
AT4G24390.1 | Symbols:  | RNI-like superfamily protein | chr4:12...   149   2e-36
AT4G24390.2 | Symbols:  | RNI-like superfamily protein | chr4:12...   149   2e-36

>AT2G39940.1 | Symbols: COI1 | RNI-like superfamily protein |
           chr2:16672848-16675486 REVERSE LENGTH=592
          Length = 592

 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/308 (58%), Positives = 224/308 (72%), Gaps = 3/308 (0%)

Query: 18  VDEVLDCVIPYIDDPKDRDAVSQVCKCWYELDSLTRKHVTIALCYTTTPARLRRRFPHLE 77
           VD+V++ V+ YI DPKDRD+ S VC+ W+++DS TR+HVT+ALCYT TP RL RRFP+L 
Sbjct: 17  VDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLR 76

Query: 78  SLKLKGKPRAAMFNLIPEDWGGHVTPWVLEINQYFDCLKSLHFRRMIVKDNDLLLLAQSR 137
           SLKLKGKPRAAMFNLIPE+WGG+VTPWV EI+     LKS+HFRRMIV D DL  LA++R
Sbjct: 77  SLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKAR 136

Query: 138 GPVLHSLKLDKCCGFSTDGLLHVSRFCRNLRVLLLEESSIDEKDGEWLHELALSNTVLES 197
              L +LKLDKC GF+TDGLL +   CR ++ LL+EESS  EKDG+WLHELA  NT LE 
Sbjct: 137 ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEV 196

Query: 198 LNFYLTDVAAVKIEDLELLAKNCPNLVSVKITEYEISNLVNFFRQASSLEEFCGGIYNEK 257
           LNFY+T+ A +  +DLE +A+NC +LVSVK+ ++EI  LV FF+ A++LEEFCGG  NE 
Sbjct: 197 LNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNED 256

Query: 258 ---PEIYSALSLPAKLYRLGLTYIGKNELPMMLMFXXXXXXXXXXXXXXXXXXHCMLIQK 314
              PE Y  L  P KL RLGL+Y+G NE+P++  F                  HC LIQK
Sbjct: 257 IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK 316

Query: 315 CPNLEVLE 322
           CPNLEVLE
Sbjct: 317 CPNLEVLE 324


>AT3G62980.1 | Symbols: TIR1 | F-box/RNI-like superfamily protein |
           chr3:23273479-23276181 REVERSE LENGTH=594
          Length = 594

 Score =  183 bits (464), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/251 (40%), Positives = 145/251 (57%), Gaps = 5/251 (1%)

Query: 19  DEVLDCVIPYIDDPKDRDAVSQVCKCWYELDSLTRKHVTIALCYTTTPARLRRRFPHLES 78
           +EVL+ V  +I   KDR++VS VCK WYE++   R+ V I  CY  +PA + RRFP + S
Sbjct: 11  EEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRS 70

Query: 79  LKLKGKPRAAMFNLIPEDWGGHVTPWVLEINQYFDCLKSLHFRRMIVKDNDLLLLAQSRG 138
           ++LKGKP  A FNL+P+ WGG+V PW+  ++  +  L+ +  +RM+V D+ L L+A+S  
Sbjct: 71  VELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFK 130

Query: 139 PVLHSLKLDKCCGFSTDGLLHVSRFCRNLRVLLLEESSIDEKDGEWLHELALSNTVLESL 198
                L L  C GFSTDGL  ++  CRNL+ L L ES +D+  G WL     + T L SL
Sbjct: 131 N-FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSL 189

Query: 199 NFYLTDVAAVKIEDLELLAKNCPNLVSVKITE-YEISNLVNFFRQASSLEEFCGGIYNE- 256
           N      + V    LE L   CPNL S+K+     +  L    ++A  LEE   G Y   
Sbjct: 190 NISCL-ASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE 248

Query: 257 -KPEIYSALSL 266
            +P++YS LS+
Sbjct: 249 VRPDVYSGLSV 259


>AT4G03190.1 | Symbols: GRH1, ATGRH1, AFB1 | GRR1-like protein 1 |
           chr4:1405108-1407057 REVERSE LENGTH=585
          Length = 585

 Score =  180 bits (457), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 103/253 (40%), Positives = 144/253 (56%), Gaps = 5/253 (1%)

Query: 16  RLVDEVLDCVIPYIDDPKDRDAVSQVCKCWYELDSLTRKHVTIALCYTTTPARLRRRFPH 75
           R   +VL+ ++ +ID  +DR++VS VCK W+E +  TRK V +  CY  +PA + RRFP 
Sbjct: 4   RFPPKVLEHILSFIDSNEDRNSVSLVCKSWFETERKTRKRVFVGNCYAVSPAAVTRRFPE 63

Query: 76  LESLKLKGKPRAAMFNLIPEDWGGHVTPWVLEINQYFDCLKSLHFRRMIVKDNDLLLLAQ 135
           + SL LKGKP  A +NL+P+ WGG+  PW+  +      L+ +  +RM+V D  L  +A 
Sbjct: 64  MRSLTLKGKPHFADYNLVPDGWGGYAWPWIEAMAAKSSSLEEIRMKRMVVTDECLEKIAA 123

Query: 136 SRGPVLHSLKLDKCCGFSTDGLLHVSRFCRNLRVLLLEESSIDEKDGEWLHELALSNTVL 195
           S       L L  C GFSTDG+  ++  CRNLRVL L E  +++  G+WL     S+T L
Sbjct: 124 SFKD-FKVLVLTSCEGFSTDGIAAIAATCRNLRVLELRECIVEDLGGDWLSYFPESSTSL 182

Query: 196 ESLNFYLTDVAAVKIEDLELLAKNCPNLVSVKIT-EYEISNLVNFFRQASSLEEFCGGIY 254
            SL+F   D + VKI DLE L    PNL S+K+     +  LV+  R A  L E   G +
Sbjct: 183 VSLDFSCLD-SEVKISDLERLVSRSPNLKSLKLNPAVTLDGLVSLLRCAPQLTELGTGSF 241

Query: 255 NE--KPEIYSALS 265
               KPE +S LS
Sbjct: 242 AAQLKPEAFSKLS 254


>AT1G12820.1 | Symbols: AFB3 | auxin signaling F-box 3 |
           chr1:4368879-4370780 REVERSE LENGTH=577
          Length = 577

 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 146/264 (55%), Gaps = 13/264 (4%)

Query: 15  NRLVDEVLDCVIPYIDDPKDRDAVSQVCKCWYELDSLTRKHVTIALCYTTTPARLRRRFP 74
           N   DEV++ V  ++   KDR+++S VCK W++++  +RK V I  CY   P RL RRFP
Sbjct: 2   NYFPDEVIEHVFDFVASHKDRNSISLVCKSWHKIERFSRKEVFIGNCYAINPERLIRRFP 61

Query: 75  HLESLKLKGKPRAAMFNLIPEDWGGHVTPWVLEINQYFDCLKSLHFRRMIVKDNDLLLLA 134
            L+SL LKGKP  A FNL+P +WGG V PW+  + +    L+ L  +RM+V D  L LL+
Sbjct: 62  CLKSLTLKGKPHFADFNLVPHEWGGFVHPWIEALARSRVGLEELRLKRMVVTDESLDLLS 121

Query: 135 QSRGPVLHSLKLDKCCGFSTDGLLHVSRFCRNLRVLLLEESSIDEKDGEWLHELALSNTV 194
           +S      SL L  C GF+TDGL  ++  CR+LR L L+E+ ID+  G+WL+    S T 
Sbjct: 122 RSFAN-FKSLVLVSCEGFTTDGLASIAANCRHLRELDLQENEIDDHRGQWLNCFPDSCTT 180

Query: 195 LESLNFYL----TDVAAVKIEDLELLAKNCPNLVSVKITE-YEISNLVNFFRQASSLEEF 249
           L SLNF      T+VAA     LE L    PNL S+K+     +  L      A  L + 
Sbjct: 181 LMSLNFACLKGETNVAA-----LERLVARSPNLKSLKLNRAVPLDALARLMSCAPQLVDL 235

Query: 250 CGGIYNEK--PEIYSALSLPAKLY 271
             G Y  +  PE ++ L    K Y
Sbjct: 236 GVGSYENEPDPESFAKLMTAIKKY 259


>AT3G26810.1 | Symbols: AFB2 | auxin signaling F-box 2 |
           chr3:9868342-9870464 FORWARD LENGTH=575
          Length = 575

 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/255 (39%), Positives = 140/255 (54%), Gaps = 3/255 (1%)

Query: 15  NRLVDEVLDCVIPYIDDPKDRDAVSQVCKCWYELDSLTRKHVTIALCYTTTPARLRRRFP 74
           N   DEV++ V  ++   KDR+A+S VCK WY+++  +R+ V I  CY   P RL RRFP
Sbjct: 2   NYFPDEVIEHVFDFVTSHKDRNAISLVCKSWYKIERYSRQKVFIGNCYAINPERLLRRFP 61

Query: 75  HLESLKLKGKPRAAMFNLIPEDWGGHVTPWVLEINQYFDCLKSLHFRRMIVKDNDLLLLA 134
            L+SL LKGKP  A FNL+P +WGG V PW+  + +    L+ L  +RM+V D  L LL+
Sbjct: 62  CLKSLTLKGKPHFADFNLVPHEWGGFVLPWIEALARSRVGLEELRLKRMVVTDESLELLS 121

Query: 135 QSRGPVLHSLKLDKCCGFSTDGLLHVSRFCRNLRVLLLEESSIDEKDGEWLHELALSNTV 194
           +S      SL L  C GF+TDGL  ++  CR+LR L L+E+ ID+  G+WL     + T 
Sbjct: 122 RSFVN-FKSLVLVSCEGFTTDGLASIAANCRHLRDLDLQENEIDDHRGQWLSCFPDTCTT 180

Query: 195 LESLNFYLTDVAAVKIEDLELLAKNCPNLVSVKITE-YEISNLVNFFRQASSLEEFCGGI 253
           L +LNF   +     +  LE L    PNL S+K+     +  L      A  + +   G 
Sbjct: 181 LVTLNFACLE-GETNLVALERLVARSPNLKSLKLNRAVPLDALARLMACAPQIVDLGVGS 239

Query: 254 YNEKPEIYSALSLPA 268
           Y   P+  S L L A
Sbjct: 240 YENDPDSESYLKLMA 254


>AT5G49980.1 | Symbols: AFB5 | auxin F-box protein 5 |
           chr5:20334420-20336531 REVERSE LENGTH=619
          Length = 619

 Score =  157 bits (397), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/217 (40%), Positives = 126/217 (58%), Gaps = 2/217 (0%)

Query: 15  NRLVDEVLDCVIPYIDDPKDRDAVSQVCKCWYELDSLTRKHVTIALCYTTTPARLRRRFP 74
           + +++ VL+ V+ ++D   DR+A S VCK W+ +++LTR  V I  CY  +PARL +RF 
Sbjct: 52  DHVLENVLENVLQFLDSRCDRNAASLVCKSWWRVEALTRSEVFIGNCYALSPARLTQRFK 111

Query: 75  HLESLKLKGKPRAAMFNLIPEDWGGHVTPWVLEINQYFDCLKSLHFRRMIVKDNDLLLLA 134
            + SL LKGKPR A FNL+P DWG +  PWV  + Q + CL+ +  +RM V D+DL LLA
Sbjct: 112 RVRSLVLKGKPRFADFNLMPPDWGANFAPWVSTMAQAYPCLEKVDLKRMFVTDDDLALLA 171

Query: 135 QSRGPVLHSLKLDKCCGFSTDGLLHVSRFCRNLRVLLLEESSIDEKDGEWLHELALSNTV 194
            S  P    L L  C GF T G+  V+  CR L+VL L ES + + + +W+       T 
Sbjct: 172 DSF-PGFKELILVCCEGFGTSGISIVANKCRKLKVLDLIESEVTDDEVDWISCFPEDVTC 230

Query: 195 LESLNFYLTDVAAVKIEDLELLAKNCPNLVSVKITEY 231
           LESL F   + A +  + LE L    P L  +++  +
Sbjct: 231 LESLAFDCVE-APINFKALEGLVARSPFLKKLRLNRF 266


>AT4G24390.1 | Symbols:  | RNI-like superfamily protein |
           chr4:12613909-12615966 REVERSE LENGTH=623
          Length = 623

 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/217 (38%), Positives = 125/217 (57%), Gaps = 2/217 (0%)

Query: 15  NRLVDEVLDCVIPYIDDPKDRDAVSQVCKCWYELDSLTRKHVTIALCYTTTPARLRRRFP 74
           + +++ VL+ V+ ++    DR+AVS VC+ WY +++ TR  V I  CY+ +PARL  RF 
Sbjct: 52  DHVLENVLENVLQFLTSRCDRNAVSLVCRSWYRVEAQTRLEVFIGNCYSLSPARLIHRFK 111

Query: 75  HLESLKLKGKPRAAMFNLIPEDWGGHVTPWVLEINQYFDCLKSLHFRRMIVKDNDLLLLA 134
            + SL LKGKPR A FNL+P +WG   +PWV    + +  L+ +H +RM V D+DL LLA
Sbjct: 112 RVRSLVLKGKPRFADFNLMPPNWGAQFSPWVAATAKAYPWLEKVHLKRMFVTDDDLALLA 171

Query: 135 QSRGPVLHSLKLDKCCGFSTDGLLHVSRFCRNLRVLLLEESSIDEKDGEWLHELALSNTV 194
           +S  P    L L  C GF T G+  V+  CR L+VL L ES + + + +W+       T 
Sbjct: 172 ESF-PGFKELTLVCCEGFGTSGIAIVANKCRQLKVLDLMESEVTDDELDWISCFPEGETH 230

Query: 195 LESLNFYLTDVAAVKIEDLELLAKNCPNLVSVKITEY 231
           LESL+F   + + +  + LE L    P L  ++   +
Sbjct: 231 LESLSFDCVE-SPINFKALEELVVRSPFLKKLRTNRF 266


>AT4G24390.2 | Symbols:  | RNI-like superfamily protein |
           chr4:12613909-12615966 REVERSE LENGTH=623
          Length = 623

 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/217 (38%), Positives = 125/217 (57%), Gaps = 2/217 (0%)

Query: 15  NRLVDEVLDCVIPYIDDPKDRDAVSQVCKCWYELDSLTRKHVTIALCYTTTPARLRRRFP 74
           + +++ VL+ V+ ++    DR+AVS VC+ WY +++ TR  V I  CY+ +PARL  RF 
Sbjct: 52  DHVLENVLENVLQFLTSRCDRNAVSLVCRSWYRVEAQTRLEVFIGNCYSLSPARLIHRFK 111

Query: 75  HLESLKLKGKPRAAMFNLIPEDWGGHVTPWVLEINQYFDCLKSLHFRRMIVKDNDLLLLA 134
            + SL LKGKPR A FNL+P +WG   +PWV    + +  L+ +H +RM V D+DL LLA
Sbjct: 112 RVRSLVLKGKPRFADFNLMPPNWGAQFSPWVAATAKAYPWLEKVHLKRMFVTDDDLALLA 171

Query: 135 QSRGPVLHSLKLDKCCGFSTDGLLHVSRFCRNLRVLLLEESSIDEKDGEWLHELALSNTV 194
           +S  P    L L  C GF T G+  V+  CR L+VL L ES + + + +W+       T 
Sbjct: 172 ESF-PGFKELTLVCCEGFGTSGIAIVANKCRQLKVLDLMESEVTDDELDWISCFPEGETH 230

Query: 195 LESLNFYLTDVAAVKIEDLELLAKNCPNLVSVKITEY 231
           LESL+F   + + +  + LE L    P L  ++   +
Sbjct: 231 LESLSFDCVE-SPINFKALEELVVRSPFLKKLRTNRF 266