Miyakogusa Predicted Gene

Lj0g3v0099219.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0099219.1 tr|K0KTJ7|K0KTJ7_9ASCO Transcription initiation
factor TFIID subunit 5 OS=Wickerhamomyces ciferrii
G,39.83,1e-16,LISH,LisH dimerisation motif; TFIID_90kDa,TFIID subunit,
WD40-associated region; SUBFAMILY NOT NAMED,CUFF.5613.1
         (124 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G25150.1 | Symbols: TAF5 | TBP-associated factor 5 | chr5:867...   155   7e-39

>AT5G25150.1 | Symbols: TAF5 | TBP-associated factor 5 |
           chr5:8677117-8682058 FORWARD LENGTH=669
          Length = 669

 Score =  155 bits (392), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 71/130 (54%), Positives = 93/130 (71%), Gaps = 6/130 (4%)

Query: 1   MDEDEIVGYVTAYLKKKGFTQTEKVFQEEFQHNKNTT--TTVE----PDIANHLQALSQL 54
           MD ++I  +V  YLKKKGF+   K  +     N N +  T+V+    P++   +++ SQ 
Sbjct: 1   MDPEQINEFVVGYLKKKGFSSAAKDLESYHHQNNNGSSFTSVDYHNDPELTKLIRSFSQQ 60

Query: 55  ETGPARFHDGYSGLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFFNAF 114
           E  P R+ +GYS LR+W Y+SLDLYKHELLRV+YPVFIHC+MDLV KGH QEAR FFN+F
Sbjct: 61  EDDPTRYREGYSKLRSWAYNSLDLYKHELLRVMYPVFIHCYMDLVGKGHTQEARAFFNSF 120

Query: 115 REDHEMMHLR 124
           R+DHEM+HLR
Sbjct: 121 RKDHEMVHLR 130