Miyakogusa Predicted Gene

Lj0g3v0098479.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0098479.2 tr|E1U253|E1U253_WHEAT Phytochrome and flowering
time protein 1 OS=Triticum aestivum PE=2 SV=1,36.13,2e-17,VWFA,von
Willebrand factor, type A; Med25_VWA,Mediator complex, subunit Med25,
von Willebrand factor,CUFF.5514.2
         (153 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G25540.1 | Symbols: PFT1 | phytochrome and flowering time reg...    92   1e-19

>AT1G25540.1 | Symbols: PFT1 | phytochrome and flowering time
           regulatory protein (PFT1) | chr1:8969392-8974446 REVERSE
           LENGTH=836
          Length = 836

 Score = 92.0 bits (227), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/140 (40%), Positives = 77/140 (55%), Gaps = 20/140 (14%)

Query: 5   KWLSIVVDGNAALRPHWPHIVSEYLEKIVRRFLINCDEE---------GAYLGLLHYNTN 55
           K L +V +G AAL P+W  IVS+YLEKI+R F   C  E            L L+ +N++
Sbjct: 6   KQLIVVAEGTAALGPYWQTIVSDYLEKIIRSF---CGSELNGERNPVSTVELSLVIFNSH 62

Query: 56  FDAGYTVRFVE---WTKDVNRFLQALSSLSFNGNSQDQYTMADGLAEALMMFLKPFNYIM 112
               Y    V+   WT+DV+ FL  LSS+ F G   ++   A+GLAEALMMF  P     
Sbjct: 63  --GSYCACLVQRSGWTRDVDIFLHWLSSIQFGGGGFNEVATAEGLAEALMMFSPPSG--- 117

Query: 113 TKEEYNSAERHCLLVTAGDP 132
             +  N  +RHC+L+TA +P
Sbjct: 118 QAQPSNDLKRHCILITASNP 137