Miyakogusa Predicted Gene

Lj0g3v0098349.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0098349.1 Non Chatacterized Hit- tr|I1JKE3|I1JKE3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.31934
PE,90.53,0,RPN7,26S proteasome, regulatory subunit Rpn7;
PCI,Proteasome component (PCI) domain; no description,,CUFF.5498.1
         (412 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G61140.1 | Symbols: FUS6, ATFUS6, CSN1, COP11, EMB78, ATSK31,...   685   0.0  
AT3G12850.1 | Symbols:  | COP9 signalosome complex-related / CSN...    84   2e-16
AT4G24820.2 | Symbols:  | 26S proteasome, regulatory subunit Rpn...    81   1e-15
AT4G24820.1 | Symbols:  | 26S proteasome, regulatory subunit Rpn...    81   1e-15

>AT3G61140.1 | Symbols: FUS6, ATFUS6, CSN1, COP11, EMB78, ATSK31,
           SK31 | 26S proteasome, regulatory subunit
           Rpn7;Proteasome component (PCI) domain |
           chr3:22626335-22628895 FORWARD LENGTH=441
          Length = 441

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/413 (79%), Positives = 369/413 (89%), Gaps = 1/413 (0%)

Query: 1   MSGDQLDIEAYAGLYSGRTKIMRLLFIAD-ANKNPTVQLEALRMAYDEIKKGENTHLFRE 59
           +SG+ LDIEAYA LY GRTKIMRLLFIA+    N  +Q +ALRMAYDEIKKGENT LFRE
Sbjct: 29  ISGEPLDIEAYAALYKGRTKIMRLLFIANHCGGNHALQFDALRMAYDEIKKGENTQLFRE 88

Query: 60  VVKKIDGKLGPNYNMDSAWCDAFDRRAEQKREKLENELNAYRTNLIKESIRMGYNDLGDF 119
           VV KI  +LG  Y MD AWC+A DRRAEQK+ KLENEL++YRTNLIKESIRMGYND GDF
Sbjct: 89  VVNKIGNRLGEKYGMDLAWCEAVDRRAEQKKVKLENELSSYRTNLIKESIRMGYNDFGDF 148

Query: 120 YYAHGQLGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFSHVSSYVSKAEQTPEG 179
           YYA G LGDAFK+Y+RTRDYCTT+KHIIHMCM+AILVSIEMGQF+HV+SYV+KAEQ PE 
Sbjct: 149 YYACGMLGDAFKNYIRTRDYCTTTKHIIHMCMNAILVSIEMGQFTHVTSYVNKAEQNPET 208

Query: 180 LDPITVSKLRCAAGLANLEAKKYKLAARKFLETGPELVNHYNEVIAPQDVATYGGLCALA 239
           L+P+  +KLRCA+GLA+LE KKYKLAARKFL+  PEL N YNEVIAPQD+ATYGGLCALA
Sbjct: 209 LEPMVNAKLRCASGLAHLELKKYKLAARKFLDVNPELGNSYNEVIAPQDIATYGGLCALA 268

Query: 240 TFDRAELKAKVIDNSNFRNFLELVPEVRELVNDFYSSHYASCLEYLGNLKANLLLDIHLH 299
           +FDR+ELK KVIDN NFRNFLELVP+VREL+NDFYSS YASCLEYL +LK+NLLLDIHLH
Sbjct: 269 SFDRSELKQKVIDNINFRNFLELVPDVRELINDFYSSRYASCLEYLASLKSNLLLDIHLH 328

Query: 300 DHVETLYDQIRHKALIQYTLPFVSVDLNMMADAFKTTVVGLQKELEALITDNQIQARIDS 359
           DHV+TLYDQIR KALIQYTLPFVSVDL+ MADAFKT+V GL+KELEALITDNQIQARIDS
Sbjct: 329 DHVDTLYDQIRKKALIQYTLPFVSVDLSRMADAFKTSVSGLEKELEALITDNQIQARIDS 388

Query: 360 HNKILYARHADQRNATFQRVLDTGREFDRDVRSMLLRANLIKHDHNLRALRKL 412
           HNKILYARHADQRNATFQ+VL  G EFDRDVR+MLLRANL+KH+++ R+ RKL
Sbjct: 389 HNKILYARHADQRNATFQKVLQMGNEFDRDVRAMLLRANLLKHEYHARSARKL 441


>AT3G12850.1 | Symbols:  | COP9 signalosome complex-related / CSN
           complex-related | chr3:4088374-4090303 REVERSE
           LENGTH=367
          Length = 367

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 133/322 (41%), Gaps = 66/322 (20%)

Query: 6   LDIEAYAGLYSGRTKIMRLLFIADANKNPT----VQLEALRMAYDEIKKGE---NTHLFR 58
           LD+EAY+  Y GR  ++RLL IA+ +  P     ++LEALR+AYD I+      +  LF 
Sbjct: 11  LDVEAYSRNYEGRNLVLRLLHIAENSVGPMFTDDLELEALRLAYDLIRNDGIVCDMRLFT 70

Query: 59  EVVKKIDGKLGPNYNMDSAWCDAFDRRAEQKREKLENELNAYRTNLIKESIRMGYNDLGD 118
            + +KI G+LG  Y +D  W    +    ++   L N+L +    L K+ + +    L  
Sbjct: 71  VIAEKIQGRLGEGYLLDEKWRLTKNNNFVKQDSILRNDLESATDELEKDRLALRQYWL-- 128

Query: 119 FYYAHGQLGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFSHVSSYVSKAEQTPE 178
            +Y  GQ+   F+ Y R           I   M+ +LV++E   F  +        ++ E
Sbjct: 129 -HYHCGQMAIVFRPYPR-------QVQTIDAYMATLLVALETRNFGEL------PHRSVE 174

Query: 179 GLDPITVS-----KLRCAAGLANLEAKKYKLAAR-----KFLETGPELVNHYNEVIAPQD 228
            +    V      K+ C   L+NL   KY++ A        +    ++ +H   VI P  
Sbjct: 175 QIAYCNVKRAYGFKIDCFKSLSNLLESKYQVTAEGNAVDTIVNPIGQVASHLENVIKPFG 234

Query: 229 VATYGGLCALATFDRAELKAKVIDNSNFRNFLELVPEVRELVNDFYSSHYASCLEYLGNL 288
              Y                 +ID                ++    + H+  C+  L   
Sbjct: 235 PCDY-----------------LID----------------VIKKLLAGHFTDCMTLLEKQ 261

Query: 289 KANLLLDIHLHDHVETLYDQIR 310
           +  LLLD +L DHV+ L   +R
Sbjct: 262 RPRLLLDFYLRDHVDNLLSMMR 283


>AT4G24820.2 | Symbols:  | 26S proteasome, regulatory subunit
           Rpn7;Proteasome component (PCI) domain |
           chr4:12790471-12792599 REVERSE LENGTH=387
          Length = 387

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 3/222 (1%)

Query: 163 FSHVSSYVSKAEQT-PEGLDPITVSKLRCAAGLANLEAKKYKLAARKFLETGPELVNHYN 221
           F  VS  + KA++   EG D    ++L+   GL  +  + +K AA  FL++      +  
Sbjct: 152 FDLVSKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTY-- 209

Query: 222 EVIAPQDVATYGGLCALATFDRAELKAKVIDNSNFRNFLELVPEVRELVNDFYSSHYASC 281
           E+   +    Y  L ++ T DR  LK KV+D       L  +P + E +N  Y   Y + 
Sbjct: 210 EIFPYETFIFYTVLTSIITLDRVSLKQKVVDAPEILTVLGKIPFLSEFLNSLYECQYKAF 269

Query: 282 LEYLGNLKANLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLNMMADAFKTTVVGLQ 341
                 +   +  D +L+ H      ++R     Q+   + SV +  MA AF  +V  + 
Sbjct: 270 FSAFAGMAVQIKYDRYLYPHFRFYMREVRTVVYSQFLESYKSVTVEAMAKAFGVSVDFID 329

Query: 342 KELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLDTG 383
           +EL   I   ++  +ID    +L     D +NA +Q  +  G
Sbjct: 330 QELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQG 371


>AT4G24820.1 | Symbols:  | 26S proteasome, regulatory subunit
           Rpn7;Proteasome component (PCI) domain |
           chr4:12790471-12792599 REVERSE LENGTH=387
          Length = 387

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 3/222 (1%)

Query: 163 FSHVSSYVSKAEQT-PEGLDPITVSKLRCAAGLANLEAKKYKLAARKFLETGPELVNHYN 221
           F  VS  + KA++   EG D    ++L+   GL  +  + +K AA  FL++      +  
Sbjct: 152 FDLVSKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTY-- 209

Query: 222 EVIAPQDVATYGGLCALATFDRAELKAKVIDNSNFRNFLELVPEVRELVNDFYSSHYASC 281
           E+   +    Y  L ++ T DR  LK KV+D       L  +P + E +N  Y   Y + 
Sbjct: 210 EIFPYETFIFYTVLTSIITLDRVSLKQKVVDAPEILTVLGKIPFLSEFLNSLYECQYKAF 269

Query: 282 LEYLGNLKANLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLNMMADAFKTTVVGLQ 341
                 +   +  D +L+ H      ++R     Q+   + SV +  MA AF  +V  + 
Sbjct: 270 FSAFAGMAVQIKYDRYLYPHFRFYMREVRTVVYSQFLESYKSVTVEAMAKAFGVSVDFID 329

Query: 342 KELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLDTG 383
           +EL   I   ++  +ID    +L     D +NA +Q  +  G
Sbjct: 330 QELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQG 371