Miyakogusa Predicted Gene

Lj0g3v0097159.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0097159.1 gene.g7414.t1.1
         (78 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G28088.1 | Symbols:  | Low temperature and salt responsive pr...   119   3e-28
AT2G24040.1 | Symbols:  | Low temperature and salt responsive pr...   114   9e-27
AT4G30660.2 | Symbols:  | Low temperature and salt responsive pr...   114   2e-26
AT4G30660.1 | Symbols:  | Low temperature and salt responsive pr...   114   2e-26
AT4G30650.1 | Symbols:  | Low temperature and salt responsive pr...    92   6e-20
AT2G38905.1 | Symbols:  | Low temperature and salt responsive pr...    64   3e-11
AT3G05880.1 | Symbols: RCI2A | Low temperature and salt responsi...    62   8e-11
AT3G05890.1 | Symbols: RCI2B | Low temperature and salt responsi...    60   4e-10
AT1G57550.1 | Symbols:  | Low temperature and salt responsive pr...    49   7e-07

>AT4G28088.1 | Symbols:  | Low temperature and salt responsive
          protein family | chr4:13961244-13961560 REVERSE
          LENGTH=77
          Length = 77

 Score =  119 bits (299), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 67/72 (93%)

Query: 1  MPSRCAICCELLIAVLLPPLGVCLRHGCCTVEFIICLLLTILGYIPGIIYALYAIIFIDR 60
          M + C ICCE++IA+L+PPLGVCLRHGCCT EF+ICL+LT+LGY+PGIIYALYAI+++DR
Sbjct: 1  MANGCEICCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAIVYVDR 60

Query: 61 DQYFDESRRPLY 72
          DQ+FDE RRPL+
Sbjct: 61 DQFFDEYRRPLF 72


>AT2G24040.1 | Symbols:  | Low temperature and salt responsive
          protein family | chr2:10224028-10224531 FORWARD
          LENGTH=75
          Length = 75

 Score =  114 bits (286), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 63/72 (87%)

Query: 1  MPSRCAICCELLIAVLLPPLGVCLRHGCCTVEFIICLLLTILGYIPGIIYALYAIIFIDR 60
          M S C +CCE+ IA+LLPP+GVCLRHGCCTVEF ICL+LT LGY+PGIIYA+YAI F+ R
Sbjct: 1  MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60

Query: 61 DQYFDESRRPLY 72
          D+YFDE RRP+Y
Sbjct: 61 DEYFDEYRRPIY 72


>AT4G30660.2 | Symbols:  | Low temperature and salt responsive
          protein family | chr4:14955470-14955944 FORWARD
          LENGTH=74
          Length = 74

 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/73 (71%), Positives = 64/73 (87%)

Query: 1  MPSRCAICCELLIAVLLPPLGVCLRHGCCTVEFIICLLLTILGYIPGIIYALYAIIFIDR 60
          MPS C I CE++IA+LLPPLGVC R GCCTVEF+ICL+LTILGY+PGIIYA+Y I+F  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 DQYFDESRRPLYA 73
          ++YFDE RRP+Y+
Sbjct: 61 EEYFDEYRRPIYS 73


>AT4G30660.1 | Symbols:  | Low temperature and salt responsive
          protein family | chr4:14955470-14955944 FORWARD
          LENGTH=74
          Length = 74

 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/73 (71%), Positives = 64/73 (87%)

Query: 1  MPSRCAICCELLIAVLLPPLGVCLRHGCCTVEFIICLLLTILGYIPGIIYALYAIIFIDR 60
          MPS C I CE++IA+LLPPLGVC R GCCTVEF+ICL+LTILGY+PGIIYA+Y I+F  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 DQYFDESRRPLYA 73
          ++YFDE RRP+Y+
Sbjct: 61 EEYFDEYRRPIYS 73


>AT4G30650.1 | Symbols:  | Low temperature and salt responsive
          protein family | chr4:14954403-14954698 FORWARD
          LENGTH=73
          Length = 73

 Score = 92.4 bits (228), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 44/61 (72%), Positives = 53/61 (86%)

Query: 1  MPSRCAICCELLIAVLLPPLGVCLRHGCCTVEFIICLLLTILGYIPGIIYALYAIIFIDR 60
          M S   + CE+LIA+LLPPLGVCL+ GCCTVEF+ICL+LTILGYIPGIIYALY I+F +R
Sbjct: 1  MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNR 60

Query: 61 D 61
          +
Sbjct: 61 E 61


>AT2G38905.1 | Symbols:  | Low temperature and salt responsive
          protein family | chr2:16244218-16244472 REVERSE
          LENGTH=54
          Length = 54

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 42/47 (89%), Gaps = 1/47 (2%)

Query: 10 ELLIAVLLPPLGVCLRHGCCTVEFIICLLLTILGYIPGIIYALYAII 56
          E+++A+LLPP+GV LR+GC  VEF ICLLLTILGYIPGIIYA+Y ++
Sbjct: 8  EIILAILLPPVGVFLRYGC-GVEFWICLLLTILGYIPGIIYAIYVLV 53


>AT3G05880.1 | Symbols: RCI2A | Low temperature and salt
          responsive protein family | chr3:1756195-1756494
          REVERSE LENGTH=54
          Length = 54

 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 41/52 (78%), Gaps = 1/52 (1%)

Query: 4  RCAICCELLIAVLLPPLGVCLRHGCCTVEFIICLLLTILGYIPGIIYALYAI 55
            A   +++IA+LLPPLGV LR GC  VEF ICL+LT+LGYIPGIIYA+Y +
Sbjct: 2  STATFVDIIIAILLPPLGVFLRFGC-GVEFWICLVLTLLGYIPGIIYAIYVL 52


>AT3G05890.1 | Symbols: RCI2B | Low temperature and salt
          responsive protein family | chr3:1758179-1758452
          REVERSE LENGTH=54
          Length = 54

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 40/52 (76%), Gaps = 1/52 (1%)

Query: 4  RCAICCELLIAVLLPPLGVCLRHGCCTVEFIICLLLTILGYIPGIIYALYAI 55
            A   E+++A++LPPLGV L+ GC  VEF ICL+LT+ GY+PGI+YALY I
Sbjct: 2  STATFVEIILAIILPPLGVFLKFGC-KVEFWICLILTLFGYLPGILYALYII 52


>AT1G57550.1 | Symbols:  | Low temperature and salt responsive
          protein family | chr1:21312541-21312809 REVERSE
          LENGTH=52
          Length = 52

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 36/46 (78%), Gaps = 1/46 (2%)

Query: 10 ELLIAVLLPPLGVCLRHGCCTVEFIICLLLTILGYIPGIIYALYAI 55
          E+L A+ +PP+GV LR+G   +EF +CLLLT+  +IPG+IYA+Y +
Sbjct: 6  EVLCAIFIPPVGVFLRYGL-GLEFWVCLLLTLFAFIPGLIYAIYVL 50