Miyakogusa Predicted Gene

Lj0g3v0096839.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0096839.1 tr|J3S9L2|J3S9L2_CROAD Signal peptidase complex
subunit 3-like OS=Crotalus adamanteus PE=2 SV=1,36.13,4e-19,seg,NULL;
SUBFAMILY NOT NAMED,NULL; MICROSOMAL SIGNAL PEPTIDASE 23 KD SUBUNIT
(SPC22/23),Signal pept,CUFF.5398.1
         (149 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27430.1 | Symbols:  | Signal peptidase subunit | chr5:968747...   221   2e-58
AT3G05230.1 | Symbols:  | Signal peptidase subunit | chr3:149230...   208   9e-55
AT3G05230.2 | Symbols:  | Signal peptidase subunit | chr3:149230...   165   1e-41

>AT5G27430.1 | Symbols:  | Signal peptidase subunit |
           chr5:9687470-9689185 FORWARD LENGTH=167
          Length = 167

 Score =  221 bits (562), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 103/149 (69%), Positives = 115/149 (77%)

Query: 1   MHSFGYRXXXXXXXXXXXXXXMCAMAXXXXXXXXXXXXXQVQVLNINWFQKQPNGNDEVS 60
           MHSFGYR              +CA+A             Q+Q+LNINWFQKQP+GNDEVS
Sbjct: 1   MHSFGYRANALLTFAVTILAFICAIASFSDNFSNQNPSAQIQILNINWFQKQPHGNDEVS 60

Query: 61  MTLNISADLQSLFTWNTKQVFVFLAAEYETSKNSLNQISLWDAIIPSKERAKFWIHTSNK 120
           +TLNI+ADLQSLFTWNTKQVF F+AAEYETSKN+LNQ+SLWDAIIP KE AKFWI  SNK
Sbjct: 61  LTLNITADLQSLFTWNTKQVFAFVAAEYETSKNALNQVSLWDAIIPEKEHAKFWIQISNK 120

Query: 121 YRFIDQGSNLRSKEFNLTMHWHVMPKTGK 149
           YRFIDQG NLR K+FNLT+HWHVMPKTGK
Sbjct: 121 YRFIDQGHNLRGKDFNLTLHWHVMPKTGK 149


>AT3G05230.1 | Symbols:  | Signal peptidase subunit |
           chr3:1492304-1493452 FORWARD LENGTH=167
          Length = 167

 Score =  208 bits (530), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 98/149 (65%), Positives = 113/149 (75%)

Query: 1   MHSFGYRXXXXXXXXXXXXXXMCAMAXXXXXXXXXXXXXQVQVLNINWFQKQPNGNDEVS 60
           MH+FGYR              +CA+A             ++Q+LNIN F+KQ +GNDEVS
Sbjct: 1   MHTFGYRANALLTFAVTALAFICAIASFSDKFSNQNPSAEIQILNINRFKKQSHGNDEVS 60

Query: 61  MTLNISADLQSLFTWNTKQVFVFLAAEYETSKNSLNQISLWDAIIPSKERAKFWIHTSNK 120
           +TL+ISADLQSLFTWNTKQVFVF+AAEYET KNSLNQ+SLWDAIIP+KE AKF I  SNK
Sbjct: 61  LTLDISADLQSLFTWNTKQVFVFVAAEYETPKNSLNQVSLWDAIIPAKEHAKFRIQVSNK 120

Query: 121 YRFIDQGSNLRSKEFNLTMHWHVMPKTGK 149
           YRFIDQG NLR K+FNLT+HWHVMPKTGK
Sbjct: 121 YRFIDQGQNLRGKDFNLTLHWHVMPKTGK 149


>AT3G05230.2 | Symbols:  | Signal peptidase subunit |
           chr3:1492304-1493360 FORWARD LENGTH=136
          Length = 136

 Score =  165 bits (417), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 79/126 (62%), Positives = 92/126 (73%)

Query: 1   MHSFGYRXXXXXXXXXXXXXXMCAMAXXXXXXXXXXXXXQVQVLNINWFQKQPNGNDEVS 60
           MH+FGYR              +CA+A             ++Q+LNIN F+KQ +GNDEVS
Sbjct: 1   MHTFGYRANALLTFAVTALAFICAIASFSDKFSNQNPSAEIQILNINRFKKQSHGNDEVS 60

Query: 61  MTLNISADLQSLFTWNTKQVFVFLAAEYETSKNSLNQISLWDAIIPSKERAKFWIHTSNK 120
           +TL+ISADLQSLFTWNTKQVFVF+AAEYET KNSLNQ+SLWDAIIP+KE AKF I  SNK
Sbjct: 61  LTLDISADLQSLFTWNTKQVFVFVAAEYETPKNSLNQVSLWDAIIPAKEHAKFRIQVSNK 120

Query: 121 YRFIDQ 126
           YRFIDQ
Sbjct: 121 YRFIDQ 126