Miyakogusa Predicted Gene

Lj0g3v0096739.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0096739.1 Non Chatacterized Hit- tr|C6T5K8|C6T5K8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.19055
PE,82.35,0.000000006, ,CUFF.5371.1
         (34 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G35736.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    59   5e-10
AT2G35736.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    59   5e-10
AT4G25225.1 | Symbols:  | unknown protein; LOCATED IN: endomembr...    51   1e-07

>AT2G35736.2 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: endomembrane
          system; EXPRESSED IN: 22 plant structures; EXPRESSED
          DURING: 13 growth stages; BEST Arabidopsis thaliana
          protein match is: unknown protein (TAIR:AT4G25225.1). |
          chr2:15023084-15023254 REVERSE LENGTH=56
          Length = 56

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 29/34 (85%)

Query: 1  MGIIRSCFSLIAGTVFGVYLAQNYQVPNLKKLAD 34
          MGI RSCFS I G+VFGVYLAQNY VPN++KL +
Sbjct: 1  MGIFRSCFSFITGSVFGVYLAQNYNVPNIRKLTN 34


>AT2G35736.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: endomembrane
          system; EXPRESSED IN: 22 plant structures; EXPRESSED
          DURING: 13 growth stages; BEST Arabidopsis thaliana
          protein match is: unknown protein (TAIR:AT4G25225.1);
          Has 78 Blast hits to 78 proteins in 13 species: Archae
          - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78;
          Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
          | chr2:15023084-15023254 REVERSE LENGTH=56
          Length = 56

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 29/34 (85%)

Query: 1  MGIIRSCFSLIAGTVFGVYLAQNYQVPNLKKLAD 34
          MGI RSCFS I G+VFGVYLAQNY VPN++KL +
Sbjct: 1  MGIFRSCFSFITGSVFGVYLAQNYNVPNIRKLTN 34


>AT4G25225.1 | Symbols:  | unknown protein; LOCATED IN:
          endomembrane system; BEST Arabidopsis thaliana protein
          match is: unknown protein (TAIR:AT2G35736.2); Has 78
          Blast hits to 78 proteins in 13 species: Archae - 0;
          Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78;
          Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
          | chr4:12923086-12923256 REVERSE LENGTH=56
          Length = 56

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/33 (69%), Positives = 26/33 (78%)

Query: 1  MGIIRSCFSLIAGTVFGVYLAQNYQVPNLKKLA 33
          MGIIRS FS I GTV G+Y+AQ Y VPN+KKL 
Sbjct: 1  MGIIRSSFSFIMGTVCGIYIAQTYNVPNIKKLG 33