Miyakogusa Predicted Gene

Lj0g3v0096719.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0096719.1 CUFF.5378.1
         (149 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12180.1 | Symbols:  | Cornichon family protein | chr3:388346...   154   3e-38
AT1G12390.1 | Symbols:  | Cornichon family protein | chr1:422034...   117   3e-27
AT1G12340.1 | Symbols:  | Cornichon family protein | chr1:419739...   113   5e-26
AT1G62880.1 | Symbols:  | Cornichon family protein | chr1:232921...   108   1e-24
AT4G12090.1 | Symbols:  | Cornichon family protein | chr4:724216...    97   4e-21

>AT3G12180.1 | Symbols:  | Cornichon family protein |
           chr3:3883464-3884570 FORWARD LENGTH=146
          Length = 146

 Score =  154 bits (388), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 81/148 (54%), Positives = 102/148 (68%), Gaps = 3/148 (2%)

Query: 1   MGWNLFFWLVICFPSNIALLASTFYQILILSDLEADYVNPFDASSRINYFVLPEFIGQGV 60
           M W+LF W+V  F S +AL+AS FYQ++ L+DLEADY+NPF+ S+RIN  V+PEFI QG 
Sbjct: 1   MAWDLFLWIVSFFVS-LALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGS 59

Query: 61  LCALCLFTGHWVMFLLTVPVTCYHVMLYVKRQHLIDVTEVFRVLNAEKRFRIAKXXXXXX 120
           LC L L T HWV FL+ VPVT YH MLY +R++LIDVTEVFR ++ EK+ R  K      
Sbjct: 60  LCLLFLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYVF 119

Query: 121 XXXXXXFRLTLIAVFYLGIEDDDDLGNL 148
                 FRLTL AV+     +DDDL +L
Sbjct: 120 LFIMVVFRLTLSAVY--SFTEDDDLLHL 145


>AT1G12390.1 | Symbols:  | Cornichon family protein |
           chr1:4220347-4221481 FORWARD LENGTH=137
          Length = 137

 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 72/98 (73%)

Query: 17  IALLASTFYQILILSDLEADYVNPFDASSRINYFVLPEFIGQGVLCALCLFTGHWVMFLL 76
           IAL+    YQ++ L+DLE DY+NP+D++SRIN  VLPEFI QGVLC   L TGHW M LL
Sbjct: 15  IALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLL 74

Query: 77  TVPVTCYHVMLYVKRQHLIDVTEVFRVLNAEKRFRIAK 114
            +P   Y+  LY KRQHL+DVTE+F +LN EK+ R+ K
Sbjct: 75  CLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFK 112


>AT1G12340.1 | Symbols:  | Cornichon family protein |
           chr1:4197396-4198032 FORWARD LENGTH=129
          Length = 129

 Score =  113 bits (282), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 54/95 (56%), Positives = 70/95 (73%)

Query: 20  LASTFYQILILSDLEADYVNPFDASSRINYFVLPEFIGQGVLCALCLFTGHWVMFLLTVP 79
           LA+  + ++ L+DLE DY+NP+D++SRIN  VLPEFI QGVLC   L TGHW M LL +P
Sbjct: 10  LANGIFHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLP 69

Query: 80  VTCYHVMLYVKRQHLIDVTEVFRVLNAEKRFRIAK 114
              Y+  LY KRQHL+DVTE+F +LN EK+ R+ K
Sbjct: 70  YLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFK 104


>AT1G62880.1 | Symbols:  | Cornichon family protein |
           chr1:23292125-23293307 FORWARD LENGTH=137
          Length = 137

 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/105 (53%), Positives = 73/105 (69%)

Query: 10  VICFPSNIALLASTFYQILILSDLEADYVNPFDASSRINYFVLPEFIGQGVLCALCLFTG 69
           +I F   I LL    YQ++ L+DLE DY+NP+D++SRIN+ VLPE I QG LC   L TG
Sbjct: 8   IISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLCVFYLVTG 67

Query: 70  HWVMFLLTVPVTCYHVMLYVKRQHLIDVTEVFRVLNAEKRFRIAK 114
           HW M LL VP   Y+  LY ++QHLIDVTE+F +L+ EK+ R+ K
Sbjct: 68  HWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRLFK 112


>AT4G12090.1 | Symbols:  | Cornichon family protein |
           chr4:7242165-7242924 REVERSE LENGTH=135
          Length = 135

 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 68/105 (64%)

Query: 10  VICFPSNIALLASTFYQILILSDLEADYVNPFDASSRINYFVLPEFIGQGVLCALCLFTG 69
           +I F     L+    YQ+  L+DLE D +NP+D SSRIN  VLPEF  QG+LC   + TG
Sbjct: 8   IISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLCLYYILTG 67

Query: 70  HWVMFLLTVPVTCYHVMLYVKRQHLIDVTEVFRVLNAEKRFRIAK 114
           HW M +L++P   Y++ LY+KR+HL DVTE++     E++ R+ K
Sbjct: 68  HWFMAVLSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYK 112