Miyakogusa Predicted Gene

Lj0g3v0095649.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0095649.1 Non Chatacterized Hit- tr|I3SB34|I3SB34_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.16,0,ZINC_FINGER_C2H2_1,Zinc finger, C2H2; UPF0023,Ribosome
maturation protein SBDS, conserved site; FYSH,CUFF.5302.1
         (359 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G43860.1 | Symbols:  | sequence-specific DNA binding transcri...   493   e-140
AT4G31420.2 | Symbols:  | Zinc finger protein 622 | chr4:1524598...    50   3e-06
AT4G31420.1 | Symbols:  | Zinc finger protein 622 | chr4:1524598...    50   3e-06
AT2G24500.1 | Symbols: FZF | Zinc finger protein 622 | chr2:1040...    49   4e-06

>AT1G43860.1 | Symbols:  | sequence-specific DNA binding
           transcription factors | chr1:16622244-16624385 REVERSE
           LENGTH=370
          Length = 370

 Score =  493 bits (1270), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 237/371 (63%), Positives = 296/371 (79%), Gaps = 13/371 (3%)

Query: 1   MSRLLVQPIGQKRLTNVAVVRLKKHGNRFEIACYPNTVLSWRSGVEKDIDEVLQSHTVYS 60
           MS+ LVQP+GQKRLTNVAVVRLKK GNRFEIACY N VLSWRSGVEKDIDEVLQSHTVYS
Sbjct: 1   MSKTLVQPVGQKRLTNVAVVRLKKQGNRFEIACYKNKVLSWRSGVEKDIDEVLQSHTVYS 60

Query: 61  NVSKGVLAKSKDLIAAFGTDDHSAICLEILKKGELQVAGKERESLLSSQFRDIATIVMHK 120
           NVSKGVLAKSKDL+ +FG+DDH+ IC++IL+KGELQVAGKERES  SSQFRDIATIVM K
Sbjct: 61  NVSKGVLAKSKDLMKSFGSDDHTKICIDILEKGELQVAGKERESQFSSQFRDIATIVMQK 120

Query: 121 TYNPETQRPYTISMIERLMREIHFAVDPHSTSKKQALELIHELQKHFPIKRCPLRIRAAA 180
           T NPETQRPYTISM+ERLM EIHFAVDPHS SKKQAL++I ELQKHFPIKR P+R+R   
Sbjct: 121 TINPETQRPYTISMVERLMHEIHFAVDPHSNSKKQALDVIRELQKHFPIKRSPMRLRLTV 180

Query: 181 PEDQVSALLEKLNEWKATVISKEGSAAQLSVIFELEPGLYKDCHDFIMDKMHGRFEVLAH 240
           P     +LLEKL EW  +V+SK+ S  Q+S + E+EPGL+++C D  +  + GR E+LA 
Sbjct: 181 PVQNFPSLLEKLKEWDGSVVSKDESGTQMSTVCEMEPGLFREC-DSHVRSIQGRLEILAV 239

Query: 241 SLYVEGDTQVDQYNDDEDM----HAPL------SKETSESVLELNDKLEKQTISSTS--K 288
           S++ EGDT +D Y++ +DM    H PL      +K+ ++ V+EL+ KL+KQ IS+T   K
Sbjct: 240 SVHAEGDTSMDHYDEHDDMALQTHKPLLPAETETKDLTDPVVELSKKLQKQEISTTDNIK 299

Query: 289 PTEGQQSKQNKCNTCNVSFEDSKLYREHHKTDWHKHNMKRKTRQLPPLTEEECTADMELG 348
              G++ K  KC+TCN    ++K YREH K+DWHKHN+KRKTR+LPP++ +EC +++++ 
Sbjct: 300 QEGGEEKKGTKCSTCNTFVGEAKQYREHCKSDWHKHNLKRKTRKLPPISADECMSEIDMD 359

Query: 349 DSKSDLKDYSF 359
           DS++DLKDYSF
Sbjct: 360 DSRADLKDYSF 370


>AT4G31420.2 | Symbols:  | Zinc finger protein 622 |
           chr4:15245987-15247763 REVERSE LENGTH=405
          Length = 405

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 300 CNTCNVSFEDSKLYREHHKTDWHKHNMKRKTRQLPPLTE 338
           CN CN+ F+D +    H+K+DWH++N+KRK   +P +TE
Sbjct: 6   CNACNMEFKDEEERNLHYKSDWHRYNLKRKVAGVPGVTE 44


>AT4G31420.1 | Symbols:  | Zinc finger protein 622 |
           chr4:15245987-15247763 REVERSE LENGTH=404
          Length = 404

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 300 CNTCNVSFEDSKLYREHHKTDWHKHNMKRKTRQLPPLTE 338
           CN CN+ F+D +    H+K+DWH++N+KRK   +P +TE
Sbjct: 6   CNACNMEFKDEEERNLHYKSDWHRYNLKRKVAGVPGVTE 44


>AT2G24500.1 | Symbols: FZF | Zinc finger protein 622 |
           chr2:10401259-10402805 REVERSE LENGTH=395
          Length = 395

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 300 CNTCNVSFEDSKLYREHHKTDWHKHNMKRKTRQLPPLTE 338
           CN+CN  FED    + H+K++WH++N+KRK   +P +TE
Sbjct: 6   CNSCNKDFEDDAEQKFHYKSEWHRYNLKRKIAGVPGVTE 44