Miyakogusa Predicted Gene

Lj0g3v0095339.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0095339.1 tr|D7LPX2|D7LPX2_ARALL Calcium ion binding
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT,39.62,3e-17,PsbQ,Photosystem II PsbQ, oxygen evolving
complex; Oxygen-evolving enhancer protein 3,,PsbQ-like
dom,gene.g7271.t1.1
         (110 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01918.1 | Symbols: PQL3 | PsbQ-like 3 | chr2:424254-425678 R...    91   1e-19
AT4G21280.2 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subu...    71   1e-13
AT4G21280.1 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subu...    71   1e-13
AT4G05180.1 | Symbols: PSBQ, PSBQ-2, PSII-Q | photosystem II sub...    69   5e-13

>AT2G01918.1 | Symbols: PQL3 | PsbQ-like 3 | chr2:424254-425678
           REVERSE LENGTH=187
          Length = 187

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 74/106 (69%), Gaps = 1/106 (0%)

Query: 3   PDLTVEEAQNGAKVHAQDLLQVRELLGAES-WKAAQRALRQSSALLRKDLYAIIQSKPGS 61
           P+ TVE AQ G + +A+++ +++E++  +  WK   + LR+S++ +++D Y IIQ+KP  
Sbjct: 79  PERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPK 138

Query: 62  ERPQLRNLFSILFNNVSRLDYAARDKDVPEIWRRYENIVVAVNDIL 107
           +RP  R+L+S LFN+++++DYAARD D  ++   Y NIV  ++DI 
Sbjct: 139 DRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIF 184


>AT4G21280.2 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subunit
           QA | chr4:11334446-11335587 FORWARD LENGTH=224
          Length = 224

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 61/106 (57%)

Query: 5   LTVEEAQNGAKVHAQDLLQVRELLGAESWKAAQRALRQSSALLRKDLYAIIQSKPGSERP 64
           L   EA   AK  A+D++ V+ L+  ++W   Q  LR  ++ LR DL  II SKP  E+ 
Sbjct: 118 LPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKK 177

Query: 65  QLRNLFSILFNNVSRLDYAARDKDVPEIWRRYENIVVAVNDILSIL 110
            L++L + LF+ +  LDYAA+ K   +  + Y   V A+N++L+ L
Sbjct: 178 SLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223


>AT4G21280.1 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subunit
           QA | chr4:11334446-11335587 FORWARD LENGTH=223
          Length = 223

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 61/106 (57%)

Query: 5   LTVEEAQNGAKVHAQDLLQVRELLGAESWKAAQRALRQSSALLRKDLYAIIQSKPGSERP 64
           L   EA   AK  A+D++ V+ L+  ++W   Q  LR  ++ LR DL  II SKP  E+ 
Sbjct: 117 LPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKK 176

Query: 65  QLRNLFSILFNNVSRLDYAARDKDVPEIWRRYENIVVAVNDILSIL 110
            L++L + LF+ +  LDYAA+ K   +  + Y   V A+N++L+ L
Sbjct: 177 SLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 222


>AT4G05180.1 | Symbols: PSBQ, PSBQ-2, PSII-Q | photosystem II
           subunit Q-2 | chr4:2672093-2673170 REVERSE LENGTH=230
          Length = 230

 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 61/106 (57%)

Query: 5   LTVEEAQNGAKVHAQDLLQVRELLGAESWKAAQRALRQSSALLRKDLYAIIQSKPGSERP 64
           L+  EA   AK  A++++ V+  +  ++W   Q  LR  ++ LR DL  +I +KP  E+ 
Sbjct: 124 LSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQ 183

Query: 65  QLRNLFSILFNNVSRLDYAARDKDVPEIWRRYENIVVAVNDILSIL 110
            L++L + LF  +  LDYAAR K  P+  + Y   V ++N++L+ L
Sbjct: 184 SLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229