Miyakogusa Predicted Gene

Lj0g3v0094919.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0094919.1 Non Chatacterized Hit- tr|I0YLC7|I0YLC7_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,38.93,0.000000000000002,seg,NULL,CUFF.5265.1
         (199 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38695.1 | Symbols:  | unknown protein; Has 65 Blast hits to ...   205   2e-53
AT2G38695.3 | Symbols:  | unknown protein; Has 56 Blast hits to ...   182   2e-46
AT2G38695.2 | Symbols:  | unknown protein; Has 54 Blast hits to ...   133   7e-32

>AT2G38695.1 | Symbols:  | unknown protein; Has 65 Blast hits to 65
           proteins in 18 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other
           Eukaryotes - 3 (source: NCBI BLink). |
           chr2:16177946-16180236 FORWARD LENGTH=212
          Length = 212

 Score =  205 bits (521), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 96/126 (76%), Positives = 111/126 (88%)

Query: 74  NNETLKKLRRYGVSGILSYGLLNTAYYLTTFLVVWLYIAPAPGKMGYLAAAERFLKVMAM 133
           + E LKKL+RYG+SGILSYGLLNT YY T FL+VW Y+APAPGKMGYLAAAERFLKVMAM
Sbjct: 87  SEELLKKLKRYGLSGILSYGLLNTVYYSTAFLLVWFYVAPAPGKMGYLAAAERFLKVMAM 146

Query: 134 VWAGSQVTKLVRAGGALALAPFVDRGLTWFTNKFKFQSQGKAFMTIVGFCCGLALIVFLV 193
           VWAGSQVTKL+R GGA+ALAP VDRGL+WFT K  F+SQGKAF  +VG C G+AL++F+V
Sbjct: 147 VWAGSQVTKLIRIGGAVALAPIVDRGLSWFTVKCNFESQGKAFGALVGICLGMALMLFIV 206

Query: 194 ITLLWA 199
           +TLLWA
Sbjct: 207 VTLLWA 212


>AT2G38695.3 | Symbols:  | unknown protein; Has 56 Blast hits to 54
           proteins in 13 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr2:16177946-16180236 FORWARD LENGTH=260
          Length = 260

 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/174 (55%), Positives = 111/174 (63%), Gaps = 48/174 (27%)

Query: 74  NNETLKKLRRYGVSGILSYGLLNTAYYLTTFLVVWLYIAPAPGKMGYLAAAERFLKVMAM 133
           + E LKKL+RYG+SGILSYGLLNT YY T FL+VW Y+APAPGKMGYLAAAERFLKVMAM
Sbjct: 87  SEELLKKLKRYGLSGILSYGLLNTVYYSTAFLLVWFYVAPAPGKMGYLAAAERFLKVMAM 146

Query: 134 VWAGSQVTKLVRAGG--------------------------------------------- 148
           VWAGSQVTKL+R GG                                             
Sbjct: 147 VWAGSQVTKLIRIGGEHVKFLGDKHSRWMQDSRTCTCICSFDCYCRPYLVVMLLPMKNVD 206

Query: 149 ---ALALAPFVDRGLTWFTNKFKFQSQGKAFMTIVGFCCGLALIVFLVITLLWA 199
              A+ALAP VDRGL+WFT K  F+SQGKAF  +VG C G+AL++F+V+TLLWA
Sbjct: 207 GCRAVALAPIVDRGLSWFTVKCNFESQGKAFGALVGICLGMALMLFIVVTLLWA 260


>AT2G38695.2 | Symbols:  | unknown protein; Has 54 Blast hits to 54
           proteins in 13 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr2:16177946-16180036 FORWARD LENGTH=201
          Length = 201

 Score =  133 bits (335), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 62/75 (82%), Positives = 68/75 (90%)

Query: 74  NNETLKKLRRYGVSGILSYGLLNTAYYLTTFLVVWLYIAPAPGKMGYLAAAERFLKVMAM 133
           + E LKKL+RYG+SGILSYGLLNT YY T FL+VW Y+APAPGKMGYLAAAERFLKVMAM
Sbjct: 87  SEELLKKLKRYGLSGILSYGLLNTVYYSTAFLLVWFYVAPAPGKMGYLAAAERFLKVMAM 146

Query: 134 VWAGSQVTKLVRAGG 148
           VWAGSQVTKL+R GG
Sbjct: 147 VWAGSQVTKLIRIGG 161