Miyakogusa Predicted Gene

Lj0g3v0094589.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0094589.1 CUFF.5242.1
         (134 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65360.1 | Symbols:  | Histone superfamily protein | chr5:261...   144   2e-35
AT5G10400.1 | Symbols:  | Histone superfamily protein | chr5:327...   144   2e-35
AT5G10390.1 | Symbols:  | Histone superfamily protein | chr5:326...   144   2e-35
AT3G27360.1 | Symbols:  | Histone superfamily protein | chr3:101...   144   2e-35
AT1G09200.1 | Symbols:  | Histone superfamily protein | chr1:297...   144   2e-35
AT4G40030.2 | Symbols:  | Histone superfamily protein | chr4:185...   141   1e-34
AT5G10980.1 | Symbols:  | Histone superfamily protein | chr5:347...   141   1e-34
AT4G40030.3 | Symbols:  | Histone superfamily protein | chr4:185...   141   1e-34
AT4G40040.2 | Symbols:  | Histone superfamily protein | chr4:185...   141   1e-34
AT4G40040.1 | Symbols:  | Histone superfamily protein | chr4:185...   141   1e-34
AT4G40030.1 | Symbols:  | Histone superfamily protein | chr4:185...   141   1e-34
AT5G65350.1 | Symbols: HTR11 | histone 3 11 | chr5:26119406-2611...   135   8e-33
AT1G75600.1 | Symbols:  | Histone superfamily protein | chr1:283...   134   3e-32
AT1G13370.1 | Symbols:  | Histone superfamily protein | chr1:458...   133   3e-32
AT1G19890.1 | Symbols: ATMGH3, MGH3 | male-gamete-specific histo...   122   5e-29
AT5G12910.1 | Symbols:  | Histone superfamily protein | chr5:407...    93   5e-20
AT1G01370.2 | Symbols: HTR12, CENH3 | Histone superfamily protei...    47   4e-06
AT1G01370.1 | Symbols: HTR12, CENH3 | Histone superfamily protei...    47   4e-06

>AT5G65360.1 | Symbols:  | Histone superfamily protein |
          chr5:26120099-26120509 REVERSE LENGTH=136
          Length = 136

 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/74 (97%), Positives = 73/74 (98%)

Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVSD 74
          LLIRKLPFQRLV +
Sbjct: 61 LLIRKLPFQRLVRE 74


>AT5G10400.1 | Symbols:  | Histone superfamily protein |
          chr5:3270478-3270888 REVERSE LENGTH=136
          Length = 136

 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/74 (97%), Positives = 73/74 (98%)

Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVSD 74
          LLIRKLPFQRLV +
Sbjct: 61 LLIRKLPFQRLVRE 74


>AT5G10390.1 | Symbols:  | Histone superfamily protein |
          chr5:3269065-3269475 REVERSE LENGTH=136
          Length = 136

 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/74 (97%), Positives = 73/74 (98%)

Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVSD 74
          LLIRKLPFQRLV +
Sbjct: 61 LLIRKLPFQRLVRE 74


>AT3G27360.1 | Symbols:  | Histone superfamily protein |
          chr3:10129459-10129869 REVERSE LENGTH=136
          Length = 136

 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/74 (97%), Positives = 73/74 (98%)

Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVSD 74
          LLIRKLPFQRLV +
Sbjct: 61 LLIRKLPFQRLVRE 74


>AT1G09200.1 | Symbols:  | Histone superfamily protein |
          chr1:2971722-2972132 REVERSE LENGTH=136
          Length = 136

 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/74 (97%), Positives = 73/74 (98%)

Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVSD 74
          LLIRKLPFQRLV +
Sbjct: 61 LLIRKLPFQRLVRE 74


>AT4G40030.2 | Symbols:  | Histone superfamily protein |
           chr4:18555840-18556827 REVERSE LENGTH=164
          Length = 164

 Score =  141 bits (356), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/74 (94%), Positives = 72/74 (97%)

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 29  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 88

Query: 61  LLIRKLPFQRLVSD 74
           LLIRKLPFQRLV +
Sbjct: 89  LLIRKLPFQRLVRE 102


>AT5G10980.1 | Symbols:  | Histone superfamily protein |
          chr5:3472591-3473349 REVERSE LENGTH=136
          Length = 136

 Score =  141 bits (355), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/74 (94%), Positives = 72/74 (97%)

Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVSD 74
          LLIRKLPFQRLV +
Sbjct: 61 LLIRKLPFQRLVRE 74


>AT4G40030.3 | Symbols:  | Histone superfamily protein |
          chr4:18555840-18556417 REVERSE LENGTH=136
          Length = 136

 Score =  141 bits (355), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/74 (94%), Positives = 72/74 (97%)

Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVSD 74
          LLIRKLPFQRLV +
Sbjct: 61 LLIRKLPFQRLVRE 74


>AT4G40040.2 | Symbols:  | Histone superfamily protein |
          chr4:18557539-18558236 REVERSE LENGTH=136
          Length = 136

 Score =  141 bits (355), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/74 (94%), Positives = 72/74 (97%)

Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVSD 74
          LLIRKLPFQRLV +
Sbjct: 61 LLIRKLPFQRLVRE 74


>AT4G40040.1 | Symbols:  | Histone superfamily protein |
          chr4:18557539-18558236 REVERSE LENGTH=136
          Length = 136

 Score =  141 bits (355), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/74 (94%), Positives = 72/74 (97%)

Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVSD 74
          LLIRKLPFQRLV +
Sbjct: 61 LLIRKLPFQRLVRE 74


>AT4G40030.1 | Symbols:  | Histone superfamily protein |
          chr4:18555840-18556417 REVERSE LENGTH=136
          Length = 136

 Score =  141 bits (355), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/74 (94%), Positives = 72/74 (97%)

Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVSD 74
          LLIRKLPFQRLV +
Sbjct: 61 LLIRKLPFQRLVRE 74


>AT5G65350.1 | Symbols: HTR11 | histone 3 11 |
          chr5:26119406-26119825 REVERSE LENGTH=139
          Length = 139

 Score =  135 bits (340), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 67/74 (90%), Positives = 71/74 (95%)

Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTAR STGGKAPRKQLA KAAR+SAPATGGVKKPHRFRPGTVALR+IRKYQKSTE
Sbjct: 1  MARTKQTARISTGGKAPRKQLAPKAARQSAPATGGVKKPHRFRPGTVALRDIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVSD 74
          +LIRKLPFQRLV +
Sbjct: 61 ILIRKLPFQRLVRE 74


>AT1G75600.1 | Symbols:  | Histone superfamily protein |
          chr1:28390753-28391461 FORWARD LENGTH=136
          Length = 136

 Score =  134 bits (336), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/74 (90%), Positives = 69/74 (93%)

Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKS GGKAPR  LATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSHGGKAPRTLLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVSD 74
          LLIRKLPFQRLV +
Sbjct: 61 LLIRKLPFQRLVRE 74


>AT1G13370.1 | Symbols:  | Histone superfamily protein |
          chr1:4587926-4588522 REVERSE LENGTH=136
          Length = 136

 Score =  133 bits (335), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/74 (90%), Positives = 69/74 (93%)

Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQ+ARKS GGKAP KQLATKAARKSAP TGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQSARKSHGGKAPTKQLATKAARKSAPTTGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVSD 74
          LL RKLPFQRLV +
Sbjct: 61 LLNRKLPFQRLVRE 74


>AT1G19890.1 | Symbols: ATMGH3, MGH3 | male-gamete-specific
          histone H3 | chr1:6905034-6905792 FORWARD LENGTH=137
          Length = 137

 Score =  122 bits (307), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/75 (84%), Positives = 68/75 (90%), Gaps = 1/75 (1%)

Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRFRPGTVALREIRKYQKST 59
          MARTKQTARKSTGGK PRK+LATKAARK+  P  GGVK+ HRFRPGTVALREIRKYQKST
Sbjct: 1  MARTKQTARKSTGGKGPRKELATKAARKTRRPYRGGVKRAHRFRPGTVALREIRKYQKST 60

Query: 60 ELLIRKLPFQRLVSD 74
          +LLIRKLPFQRLV +
Sbjct: 61 DLLIRKLPFQRLVRE 75


>AT5G12910.1 | Symbols:  | Histone superfamily protein |
          chr5:4077162-4077557 FORWARD LENGTH=131
          Length = 131

 Score = 92.8 bits (229), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/74 (63%), Positives = 59/74 (79%), Gaps = 5/74 (6%)

Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MAR+ QTARK+TGGKAP    A +  + S P    +KKP+R++PGTVALREIRKYQK+T+
Sbjct: 1  MARSNQTARKATGGKAP--HFAMRVWQHSTPP---LKKPYRYKPGTVALREIRKYQKTTD 55

Query: 61 LLIRKLPFQRLVSD 74
          L+IRKLPFQRLV +
Sbjct: 56 LVIRKLPFQRLVKE 69


>AT1G01370.2 | Symbols: HTR12, CENH3 | Histone superfamily protein |
           chr1:143773-145400 FORWARD LENGTH=178
          Length = 178

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 3/49 (6%)

Query: 34  GGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVSDSRAVLFLL 82
           G  KK +R+RPGTVAL+EIR +QK T LLI   P    + + R++  +L
Sbjct: 72  GSQKKSYRYRPGTVALKEIRHFQKQTNLLI---PAASFIREVRSITHML 117


>AT1G01370.1 | Symbols: HTR12, CENH3 | Histone superfamily protein |
           chr1:143773-145400 FORWARD LENGTH=178
          Length = 178

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 3/49 (6%)

Query: 34  GGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVSDSRAVLFLL 82
           G  KK +R+RPGTVAL+EIR +QK T LLI   P    + + R++  +L
Sbjct: 72  GSQKKSYRYRPGTVALKEIRHFQKQTNLLI---PAASFIREVRSITHML 117