Miyakogusa Predicted Gene
- Lj0g3v0094469.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0094469.1 Non Chatacterized Hit- tr|K4C1Z8|K4C1Z8_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,59.72,8e-16,
,CUFF.5228.1
(75 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G48330.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 81 1e-16
AT3G17580.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 77 2e-15
>AT1G48330.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G17580.1); Has 40 Blast hits to 40 proteins in
11 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:17863897-17864124
FORWARD LENGTH=75
Length = 75
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 47/65 (72%), Gaps = 4/65 (6%)
Query: 3 SNWKKTITTPFKKACTLINQP----KTRDQKKSQTEQERGVMDLQGEVMACGYEDVQVMW 58
++WKKTI TPFKKA T NQP + + K + ++R V +LQG+VMACGYEDV VMW
Sbjct: 2 ASWKKTIATPFKKAATFFNQPQQTNRHANAKAREEHEKRTVQELQGDVMACGYEDVLVMW 61
Query: 59 SILDR 63
SILD+
Sbjct: 62 SILDK 66
>AT3G17580.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G48330.1); Has 40 Blast hits to 40 proteins in
11 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:6015276-6015518 FORWARD
LENGTH=80
Length = 80
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 9/70 (12%)
Query: 3 SNWKKTITTPFKKACTLINQPKTR---------DQKKSQTEQERGVMDLQGEVMACGYED 53
++WKKTI TPFKKA T NQP+ D + + ++R V +LQGEVMACGY+D
Sbjct: 2 ASWKKTIATPFKKAATFFNQPQQSPKKGCRGRMDAQAREEHEKRMVQELQGEVMACGYDD 61
Query: 54 VQVMWSILDR 63
V VMWSILD+
Sbjct: 62 VLVMWSILDK 71