Miyakogusa Predicted Gene

Lj0g3v0093659.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0093659.1 Non Chatacterized Hit- tr|K4BBP3|K4BBP3_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,41.84,3e-19,seg,NULL,CUFF.5163.1
         (149 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G15020.1 | Symbols: SNL2 | SIN3-like 2 | chr5:4859408-4865569...    64   4e-11
AT5G15020.2 | Symbols: SNL2 | SIN3-like 2 | chr5:4859408-4865569...    64   4e-11

>AT5G15020.1 | Symbols: SNL2 | SIN3-like 2 | chr5:4859408-4865569
           REVERSE LENGTH=1367
          Length = 1367

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 76/152 (50%), Gaps = 28/152 (18%)

Query: 10  DRRSAMPTVRQAHVVK---RERTTVSHCDRDPSVNRPDPDHDRGLLXXXXXXXXXXXXXX 66
           DR S  P VR+  + K   RERT  S  DRD SV+R D + D+ ++              
Sbjct: 219 DRGSGPPLVRRMFMEKDRRRERTVASRGDRDHSVDRSDLNDDKSMVKM------------ 266

Query: 67  DHREDGKR----DWERDGRDHEHDGGRYRERLSH---KRKSDRKAEDF----GAEPLLDA 115
            HR+  KR    + ER  RD E DG   ++ L H   KRKS R+ E F    G     + 
Sbjct: 267 -HRDQRKRVDKDNRERRSRDLE-DGEAEQDNLQHFSEKRKSSRRMEGFEAYSGPASHSEK 324

Query: 116 DGFFAKYPEEFAFCDKVKEKLRNPDDYQEFLK 147
           +   + Y + F FC+KVKE+L + DDYQ FLK
Sbjct: 325 NNLKSMYNQAFLFCEKVKERLCSQDDYQAFLK 356


>AT5G15020.2 | Symbols: SNL2 | SIN3-like 2 | chr5:4859408-4865569
           REVERSE LENGTH=1355
          Length = 1355

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 76/152 (50%), Gaps = 28/152 (18%)

Query: 10  DRRSAMPTVRQAHVVK---RERTTVSHCDRDPSVNRPDPDHDRGLLXXXXXXXXXXXXXX 66
           DR S  P VR+  + K   RERT  S  DRD SV+R D + D+ ++              
Sbjct: 219 DRGSGPPLVRRMFMEKDRRRERTVASRGDRDHSVDRSDLNDDKSMVKM------------ 266

Query: 67  DHREDGKR----DWERDGRDHEHDGGRYRERLSH---KRKSDRKAEDF----GAEPLLDA 115
            HR+  KR    + ER  RD E DG   ++ L H   KRKS R+ E F    G     + 
Sbjct: 267 -HRDQRKRVDKDNRERRSRDLE-DGEAEQDNLQHFSEKRKSSRRMEGFEAYSGPASHSEK 324

Query: 116 DGFFAKYPEEFAFCDKVKEKLRNPDDYQEFLK 147
           +   + Y + F FC+KVKE+L + DDYQ FLK
Sbjct: 325 NNLKSMYNQAFLFCEKVKERLCSQDDYQAFLK 356