Miyakogusa Predicted Gene
- Lj0g3v0093619.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0093619.1 Non Chatacterized Hit- tr|I1MNQ9|I1MNQ9_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,72.46,0,DEAD-like
helicases superfamily,Helicase, superfamily 1/2, ATP-binding domain;
P-loop containing nuc,CUFF.5158.1
(230 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosph... 272 2e-73
AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosph... 272 2e-73
AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosph... 253 9e-68
AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosph... 138 4e-33
AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 137 9e-33
AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosph... 136 1e-32
AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 136 1e-32
AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 136 1e-32
AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 136 1e-32
AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 136 1e-32
AT5G63120.1 | Symbols: | P-loop containing nucleoside triphosph... 135 3e-32
AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosph... 134 4e-32
AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |... 132 1e-31
AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |... 132 1e-31
AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family prote... 132 1e-31
AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 132 1e-31
AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 132 1e-31
AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosph... 127 5e-30
AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |... 125 2e-29
AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosph... 122 2e-28
AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosph... 119 1e-27
AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosph... 116 1e-26
AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosph... 115 2e-26
AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides,... 115 2e-26
AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 115 3e-26
AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 112 2e-25
AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 112 2e-25
AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 112 2e-25
AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 112 3e-25
AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 111 5e-25
AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family ... 110 7e-25
AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 109 1e-24
AT1G16280.1 | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 | ch... 108 3e-24
AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 108 4e-24
AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 107 7e-24
AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 107 7e-24
AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 105 3e-23
AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 105 3e-23
AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 105 4e-23
AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor ... 104 6e-23
AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiatio... 103 1e-22
AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA... 102 2e-22
AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA ... 102 2e-22
AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 101 4e-22
AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 101 4e-22
AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosph... 100 1e-21
AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 100 1e-21
AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 99 2e-21
AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 99 2e-21
AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 99 2e-21
AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosph... 99 3e-21
AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosph... 98 5e-21
AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosph... 97 6e-21
AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) | c... 97 6e-21
AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosph... 97 1e-20
AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase... 96 1e-20
AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosph... 96 2e-20
AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 96 2e-20
AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 95 3e-20
AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 94 9e-20
AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosph... 91 8e-19
AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosph... 86 2e-17
AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWAR... 86 3e-17
AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 85 3e-17
AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 82 3e-16
AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleos... 80 1e-15
AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside triph... 79 2e-15
AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 79 4e-15
AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 78 5e-15
AT5G19210.2 | Symbols: | P-loop containing nucleoside triphosph... 77 1e-14
AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosph... 75 4e-14
AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 73 1e-13
AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family prot... 72 2e-13
AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 72 3e-13
AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 72 3e-13
AT1G59990.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 57 7e-09
AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 | chr4:900142... 55 3e-08
AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 54 9e-08
AT2G28600.1 | Symbols: | P-loop containing nucleoside triphosph... 48 5e-06
>AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 272 bits (695), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 129/208 (62%), Positives = 168/208 (80%), Gaps = 9/208 (4%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKK 60
+E AGYD PTP+QMQAIP AL G +LL ADTGSGKT SFL+PI+S C + +++
Sbjct: 125 LETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQR 184
Query: 61 K-PLAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATP 111
+ PLA+VL+PTRELC+Q+E+ AK +G +VVGGD M GQ++RIQQGVELI+ TP
Sbjct: 185 RNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTP 244
Query: 112 GRLIDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQPQVLMFTATITSDI 171
GR++DLL+KH I+LD++ T V+DEVDCMLQRGFRDQV+QI+QALSQPQVL+F+ATI+ ++
Sbjct: 245 GRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALSQPQVLLFSATISREV 304
Query: 172 EKMANSLAKDIAVVTVGNPNCPNKAVKQ 199
EK+ SLAK+I +V++GNPN PNKAV Q
Sbjct: 305 EKVGGSLAKEIILVSIGNPNKPNKAVNQ 332
>AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 272 bits (695), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 129/208 (62%), Positives = 168/208 (80%), Gaps = 9/208 (4%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKK 60
+E AGYD PTP+QMQAIP AL G +LL ADTGSGKT SFL+PI+S C + +++
Sbjct: 125 LETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQR 184
Query: 61 K-PLAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATP 111
+ PLA+VL+PTRELC+Q+E+ AK +G +VVGGD M GQ++RIQQGVELI+ TP
Sbjct: 185 RNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTP 244
Query: 112 GRLIDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQPQVLMFTATITSDI 171
GR++DLL+KH I+LD++ T V+DEVDCMLQRGFRDQV+QI+QALSQPQVL+F+ATI+ ++
Sbjct: 245 GRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALSQPQVLLFSATISREV 304
Query: 172 EKMANSLAKDIAVVTVGNPNCPNKAVKQ 199
EK+ SLAK+I +V++GNPN PNKAV Q
Sbjct: 305 EKVGGSLAKEIILVSIGNPNKPNKAVNQ 332
>AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359628-360734
FORWARD LENGTH=368
Length = 368
Score = 253 bits (645), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 120/195 (61%), Positives = 157/195 (80%), Gaps = 9/195 (4%)
Query: 14 MQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKK-PLAIVLSPTRE 72
MQAIP AL G +LL ADTGSGKT SFL+PI+S C + ++++ PLA+VL+PTRE
Sbjct: 1 MQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRE 60
Query: 73 LCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRLIDLLTKHEID 124
LC+Q+E+ AK +G +VVGGD M GQ++RIQQGVELI+ TPGR++DLL+KH I+
Sbjct: 61 LCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIE 120
Query: 125 LDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQPQVLMFTATITSDIEKMANSLAKDIAV 184
LD++ T V+DEVDCMLQRGFRDQV+QI+QALSQPQVL+F+ATI+ ++EK+ SLAK+I +
Sbjct: 121 LDNIMTFVLDEVDCMLQRGFRDQVMQIFQALSQPQVLLFSATISREVEKVGGSLAKEIIL 180
Query: 185 VTVGNPNCPNKAVKQ 199
V++GNPN PNKAV Q
Sbjct: 181 VSIGNPNKPNKAVNQ 195
>AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:17705382-17708744
FORWARD LENGTH=633
Length = 633
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 19/230 (8%)
Query: 6 YDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKK---P 62
Y KPTPVQ AIPI L+G +L+ A TGSGKT +F PI+S + + P + P
Sbjct: 179 YVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYP 238
Query: 63 LAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRL 114
LA++LSPTREL QI + AK + GG + Q+ +++GV+++VATPGRL
Sbjct: 239 LAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRL 298
Query: 115 IDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQP-----QVLMFTATITS 169
DLL + + + ++ L +DE D ML GF Q+ +I + + P Q L+F+AT
Sbjct: 299 NDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPR 358
Query: 170 DIEKMANSLAKDIAVVTVGNPNCPNKAVKQSCEV---NNILSHLLSYMSA 216
+I+++A + + VG + Q E ++ SHL+ + A
Sbjct: 359 EIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHA 408
>AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:20574634-20577141 FORWARD LENGTH=501
Length = 501
Score = 137 bits (344), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 127/213 (59%), Gaps = 12/213 (5%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKK 60
++ AG+ +PTP+Q Q P+A+KG +L+ +A+TGSGKT S+L+P + Q +L +
Sbjct: 114 VKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPML--AHGD 171
Query: 61 KPLAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPG 112
P+ +VL+PTREL +QI++ A G + GG QV +Q+GVE+++ATPG
Sbjct: 172 GPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPG 231
Query: 113 RLIDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALS-QPQVLMFTATITSDI 171
RLID++ + +L V LV+DE D ML GF Q+ +I + Q L ++AT ++
Sbjct: 232 RLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEV 291
Query: 172 EKMANSLAKDIAVVTVGNPNC-PNKAVKQSCEV 203
E+++ + V +G+ + N+A++Q +V
Sbjct: 292 EQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDV 324
>AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:21657099-21660352
FORWARD LENGTH=646
Length = 646
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 123/230 (53%), Gaps = 19/230 (8%)
Query: 6 YDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKK---P 62
Y KPTPVQ AIPI G +L+ A TGSGKT +F PI+S + + P + P
Sbjct: 166 YVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYP 225
Query: 63 LAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRL 114
LA++LSPTREL QI + A+ + GG + Q+ +++GV+++VATPGRL
Sbjct: 226 LAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRL 285
Query: 115 IDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQP-----QVLMFTATITS 169
DLL + + L V+ L +DE D ML GF Q+ +I Q + P Q ++F+AT
Sbjct: 286 NDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPR 345
Query: 170 DIEKMANSLAKDIAVVTVGNPNCPNKAVKQSCEV---NNILSHLLSYMSA 216
+I+++A+ + + VG + Q E ++ SHL+ + A
Sbjct: 346 EIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHA 395
>AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 124/212 (58%), Gaps = 14/212 (6%)
Query: 3 AAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKP 62
+AG+ PTP+Q Q+ PIA++G +++ +A TGSGKT +LIP +QR+ D ++ P
Sbjct: 175 SAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGF--LHLQRIRND-SRMGP 231
Query: 63 LAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRL 114
+VLSPTREL QI+E A G + GG Q+ +++G +++VATPGRL
Sbjct: 232 TILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRL 291
Query: 115 IDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATITSDIEK 173
D+L I L + LV+DE D ML GF Q+ +I + + ++ Q LM+TAT + K
Sbjct: 292 NDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRK 351
Query: 174 MANSLAKDIAVVTVGNPN--CPNKAVKQSCEV 203
+A L + A V +GN + NK++ Q EV
Sbjct: 352 IAADLLVNPAQVNIGNVDELVANKSITQHIEV 383
>AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 124/212 (58%), Gaps = 14/212 (6%)
Query: 3 AAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKP 62
+AG+ PTP+Q Q+ PIA++G +++ +A TGSGKT +LIP +QR+ D ++ P
Sbjct: 175 SAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGF--LHLQRIRND-SRMGP 231
Query: 63 LAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRL 114
+VLSPTREL QI+E A G + GG Q+ +++G +++VATPGRL
Sbjct: 232 TILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRL 291
Query: 115 IDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATITSDIEK 173
D+L I L + LV+DE D ML GF Q+ +I + + ++ Q LM+TAT + K
Sbjct: 292 NDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRK 351
Query: 174 MANSLAKDIAVVTVGNPN--CPNKAVKQSCEV 203
+A L + A V +GN + NK++ Q EV
Sbjct: 352 IAADLLVNPAQVNIGNVDELVANKSITQHIEV 383
>AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 124/212 (58%), Gaps = 14/212 (6%)
Query: 3 AAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKP 62
+AG+ PTP+Q Q+ PIA++G +++ +A TGSGKT +LIP +QR+ D ++ P
Sbjct: 175 SAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGF--LHLQRIRND-SRMGP 231
Query: 63 LAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRL 114
+VLSPTREL QI+E A G + GG Q+ +++G +++VATPGRL
Sbjct: 232 TILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRL 291
Query: 115 IDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATITSDIEK 173
D+L I L + LV+DE D ML GF Q+ +I + + ++ Q LM+TAT + K
Sbjct: 292 NDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRK 351
Query: 174 MANSLAKDIAVVTVGNPN--CPNKAVKQSCEV 203
+A L + A V +GN + NK++ Q EV
Sbjct: 352 IAADLLVNPAQVNIGNVDELVANKSITQHIEV 383
>AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=618
Length = 618
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 124/212 (58%), Gaps = 14/212 (6%)
Query: 3 AAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKP 62
+AG+ PTP+Q Q+ PIA++G +++ +A TGSGKT +LIP +QR+ D ++ P
Sbjct: 175 SAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGF--LHLQRIRND-SRMGP 231
Query: 63 LAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRL 114
+VLSPTREL QI+E A G + GG Q+ +++G +++VATPGRL
Sbjct: 232 TILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRL 291
Query: 115 IDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATITSDIEK 173
D+L I L + LV+DE D ML GF Q+ +I + + ++ Q LM+TAT + K
Sbjct: 292 NDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRK 351
Query: 174 MANSLAKDIAVVTVGNPN--CPNKAVKQSCEV 203
+A L + A V +GN + NK++ Q EV
Sbjct: 352 IAADLLVNPAQVNIGNVDELVANKSITQHIEV 383
>AT5G63120.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25319798-25322071
REVERSE LENGTH=484
Length = 484
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 124/210 (59%), Gaps = 14/210 (6%)
Query: 5 GYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQ-RLLYDPNKKKPL 63
G+ +PTP+Q Q P+ALKG +L+ +A+TGSGKT ++L+P + Q RL D P+
Sbjct: 184 GFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQD---DGPI 240
Query: 64 AIVLSPTRELCIQIEEHAKAMGI--------VVGGDAMPGQVHRIQQGVELIVATPGRLI 115
++L+PTREL +QI+E ++ G+ + GG Q+ +++GVE+++ATPGRLI
Sbjct: 241 VLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI 300
Query: 116 DLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQI-YQALSQPQVLMFTATITSDIEKM 174
D+L +L V LV+DE D ML GF Q+ +I Q Q L+++AT ++E +
Sbjct: 301 DMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETL 360
Query: 175 ANSLAKDIAVVTVGNPNC-PNKAVKQSCEV 203
A +D +G+ + N+++ Q E+
Sbjct: 361 ARQFLRDPYKAIIGSTDLKANQSINQVIEI 390
>AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25318967-25322071
REVERSE LENGTH=591
Length = 591
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 124/210 (59%), Gaps = 14/210 (6%)
Query: 5 GYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQ-RLLYDPNKKKPL 63
G+ +PTP+Q Q P+ALKG +L+ +A+TGSGKT ++L+P + Q RL D P+
Sbjct: 184 GFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQD---DGPI 240
Query: 64 AIVLSPTRELCIQIEEHAKAMGI--------VVGGDAMPGQVHRIQQGVELIVATPGRLI 115
++L+PTREL +QI+E ++ G+ + GG Q+ +++GVE+++ATPGRLI
Sbjct: 241 VLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI 300
Query: 116 DLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQI-YQALSQPQVLMFTATITSDIEKM 174
D+L +L V LV+DE D ML GF Q+ +I Q Q L+++AT ++E +
Sbjct: 301 DMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETL 360
Query: 175 ANSLAKDIAVVTVGNPNC-PNKAVKQSCEV 203
A +D +G+ + N+++ Q E+
Sbjct: 361 ARQFLRDPYKAIIGSTDLKANQSINQVIEI 390
>AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=645
Length = 645
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 124/212 (58%), Gaps = 14/212 (6%)
Query: 3 AAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKP 62
+AG+ P+P+Q Q+ PIA++ +++ +A TGSGKT +LIP +QR+ D ++ P
Sbjct: 178 SAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMH--LQRIHND-SRMGP 234
Query: 63 LAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRL 114
+VLSPTREL QI+ A G + GG Q+ I++GV+++VATPGRL
Sbjct: 235 TILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRL 294
Query: 115 IDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATITSDIEK 173
D+L I L V LV+DE D ML GF Q+ +I + ++ Q LM+TAT ++ K
Sbjct: 295 NDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRK 354
Query: 174 MANSLAKDIAVVTVGNPN--CPNKAVKQSCEV 203
+A L + A V +GN + NK++ Q+ EV
Sbjct: 355 IAADLLVNPAQVNIGNVDELVANKSITQTIEV 386
>AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=712
Length = 712
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 124/212 (58%), Gaps = 14/212 (6%)
Query: 3 AAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKP 62
+AG+ P+P+Q Q+ PIA++ +++ +A TGSGKT +LIP +QR+ D ++ P
Sbjct: 246 SAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMH--LQRIHND-SRMGP 302
Query: 63 LAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRL 114
+VLSPTREL QI+ A G + GG Q+ I++GV+++VATPGRL
Sbjct: 303 TILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRL 362
Query: 115 IDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATITSDIEK 173
D+L I L V LV+DE D ML GF Q+ +I + ++ Q LM+TAT ++ K
Sbjct: 363 NDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRK 422
Query: 174 MANSLAKDIAVVTVGNPN--CPNKAVKQSCEV 203
+A L + A V +GN + NK++ Q+ EV
Sbjct: 423 IAADLLVNPAQVNIGNVDELVANKSITQTIEV 454
>AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 121/235 (51%), Gaps = 19/235 (8%)
Query: 6 YDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKK---P 62
Y +PTPVQ AIPI L +L+ A TGSGKT +F PI+S + + P + P
Sbjct: 171 YVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYP 230
Query: 63 LAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRL 114
A++LSPTREL QI + AK + GG + Q+ +++G +++VATPGRL
Sbjct: 231 FAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRL 290
Query: 115 IDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQP-----QVLMFTATITS 169
DLL + + + ++ L +DE D ML GF Q+ +I + + P Q ++F+AT S
Sbjct: 291 NDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPS 350
Query: 170 DIEKMANSLAKDIAVVTVGNPNCPNKAVKQSCEV---NNILSHLLSYMSAPESGQ 221
I+++A + + VG + Q E ++ SHL+ + A Q
Sbjct: 351 QIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQRETQ 405
>AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 121/235 (51%), Gaps = 19/235 (8%)
Query: 6 YDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKK---P 62
Y +PTPVQ AIPI L +L+ A TGSGKT +F PI+S + + P + P
Sbjct: 171 YVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYP 230
Query: 63 LAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRL 114
A++LSPTREL QI + AK + GG + Q+ +++G +++VATPGRL
Sbjct: 231 FAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRL 290
Query: 115 IDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQP-----QVLMFTATITS 169
DLL + + + ++ L +DE D ML GF Q+ +I + + P Q ++F+AT S
Sbjct: 291 NDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPS 350
Query: 170 DIEKMANSLAKDIAVVTVGNPNCPNKAVKQSCEV---NNILSHLLSYMSAPESGQ 221
I+++A + + VG + Q E ++ SHL+ + A Q
Sbjct: 351 QIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQRETQ 405
>AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 121/235 (51%), Gaps = 19/235 (8%)
Query: 6 YDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKK---P 62
Y +PTPVQ AIPI L +L+ A TGSGKT +F PI+S + + P + P
Sbjct: 171 YVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYP 230
Query: 63 LAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRL 114
A++LSPTREL QI + AK + GG + Q+ +++G +++VATPGRL
Sbjct: 231 FAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRL 290
Query: 115 IDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQP-----QVLMFTATITS 169
DLL + + + ++ L +DE D ML GF Q+ +I + + P Q ++F+AT S
Sbjct: 291 NDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPS 350
Query: 170 DIEKMANSLAKDIAVVTVGNPNCPNKAVKQSCEV---NNILSHLLSYMSAPESGQ 221
I+++A + + VG + Q E ++ SHL+ + A Q
Sbjct: 351 QIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQRETQ 405
>AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:14265679-14267880
REVERSE LENGTH=733
Length = 733
Score = 127 bits (320), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 125/217 (57%), Gaps = 31/217 (14%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRL--LYDPN 58
+E AGY KP+P+QM AIP+ L+ +++ +A+TGSGKT +F++P+++ I RL + + N
Sbjct: 328 VERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAY--ISRLPPMSEEN 385
Query: 59 KKK-PLAIVLSPTRELCIQIEEH----AKAMGI----VVGGDAMPGQVHRIQQGVELIVA 109
+ + P A+V++PTREL QIEE A +G +VGG ++ Q +I QG E+++A
Sbjct: 386 ETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIA 445
Query: 110 TPGRLIDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQPQV--------- 160
TPGRLID L + L+ +V+DE D M+ GF QV + A+ +
Sbjct: 446 TPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEEL 505
Query: 161 ---------LMFTATITSDIEKMANSLAKDIAVVTVG 188
MF+AT+ +E++A ++ VVT+G
Sbjct: 506 DEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIG 542
>AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |
chr3:1985697-1989666 REVERSE LENGTH=1088
Length = 1088
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 118/212 (55%), Gaps = 14/212 (6%)
Query: 3 AAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKP 62
+AG+ PTP+Q Q PIAL+ +++ +A TGSGKT +LIP + R + ++ P
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI---LLRHCRNDSRNGP 508
Query: 63 LAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRL 114
++L+PTREL QI++ A G + GG Q+ +++G +++VATPGRL
Sbjct: 509 TVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRL 568
Query: 115 IDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATITSDIEK 173
D+L ID V LV+DE D ML GF Q+ +I + + Q LM+TAT ++ K
Sbjct: 569 NDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRK 628
Query: 174 MANSLAKDIAVVTVGNPN--CPNKAVKQSCEV 203
+A+ L + V +G + NKA+ Q EV
Sbjct: 629 IASDLLVNPVQVNIGRVDELAANKAITQYVEV 660
>AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:19429083-19431617
REVERSE LENGTH=760
Length = 760
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 115/207 (55%), Gaps = 11/207 (5%)
Query: 6 YDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPLAI 65
Y+KPT +Q QA+PI L G +++ +A TGSGKT +F++P++ Q L + P+ +
Sbjct: 248 YEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQ--RDEGPIGV 305
Query: 66 VLSPTRELCIQI----EEHAKAMGI----VVGGDAMPGQVHRIQQGVELIVATPGRLIDL 117
+ +PTREL QI ++ +KA G+ V GG + Q ++ G E++VATPGRLID+
Sbjct: 306 ICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDM 365
Query: 118 LTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIY-QALSQPQVLMFTATITSDIEKMAN 176
L + + LV+DE D M GF QV I Q Q L+F+AT+ +EK+A
Sbjct: 366 LKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAR 425
Query: 177 SLAKDIAVVTVGNPNCPNKAVKQSCEV 203
+ D VTVG N+ + Q V
Sbjct: 426 EILSDPIRVTVGEVGMANEDITQVVNV 452
>AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7285342-7288842
FORWARD LENGTH=1166
Length = 1166
Score = 119 bits (299), Expect = 1e-27, Method: Composition-based stats.
Identities = 73/215 (33%), Positives = 118/215 (54%), Gaps = 14/215 (6%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKK 60
M+ Y+KP P+Q QA+PI + G + + +A TGSGKT F++P++ Q + +
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGD-- 601
Query: 61 KPLAIVLSPTRELCIQ----IEEHAKAMGI----VVGGDAMPGQVHRIQQGVELIVATPG 112
P+ +V++PTREL Q I + +K +GI V GG + Q+ +++G E++V TPG
Sbjct: 602 GPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPG 661
Query: 113 RLIDLLTKHE---IDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALS-QPQVLMFTATIT 168
R+ID+L +L V LV+DE D M GF Q+ +I Q + + Q ++F+AT
Sbjct: 662 RMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFP 721
Query: 169 SDIEKMANSLAKDIAVVTVGNPNCPNKAVKQSCEV 203
+E +A + + VG + NK + Q EV
Sbjct: 722 RQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEV 756
>AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7286356-7288842
FORWARD LENGTH=828
Length = 828
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 118/215 (54%), Gaps = 14/215 (6%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKK 60
M+ Y+KP P+Q QA+PI + G + + +A TGSGKT F++P++ Q + +
Sbjct: 206 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGD-- 263
Query: 61 KPLAIVLSPTRELCIQIE----EHAKAMGI----VVGGDAMPGQVHRIQQGVELIVATPG 112
P+ +V++PTREL QI + +K +GI V GG + Q+ +++G E++V TPG
Sbjct: 264 GPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPG 323
Query: 113 RLIDLLTKHE---IDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALS-QPQVLMFTATIT 168
R+ID+L +L V LV+DE D M GF Q+ +I Q + + Q ++F+AT
Sbjct: 324 RMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFP 383
Query: 169 SDIEKMANSLAKDIAVVTVGNPNCPNKAVKQSCEV 203
+E +A + + VG + NK + Q EV
Sbjct: 384 RQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEV 418
>AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2949152-2952205
REVERSE LENGTH=989
Length = 989
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 17/224 (7%)
Query: 6 YDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPLAI 65
Y+KP P+Q QA+PI + G + + +A TGSGKT F++P++ Q + + P+ +
Sbjct: 416 YEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGD--GPIGL 473
Query: 66 VLSPTRELCIQ----IEEHAKAMGI----VVGGDAMPGQVHRIQQGVELIVATPGRLIDL 117
V++PTREL Q I + +KA+GI V GG + Q+ +++G E++V TPGR+ID+
Sbjct: 474 VMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDI 533
Query: 118 LTKHE---IDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALS-QPQVLMFTATITSDIEK 173
L +L V LV+DE D M GF Q+ +I Q + Q ++F+AT +E
Sbjct: 534 LCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVET 593
Query: 174 MANSLAKDIAVVTVGNPNCPNKAVKQSCEV---NNILSHLLSYM 214
+A + + VG + NK + Q E+ + S LL +
Sbjct: 594 LARKVLNKPVEIQVGGRSVVNKDITQLVEIRPESERFSRLLELL 637
>AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides, in
phosphorus-containing anhydrides;ATP-dependent
helicases;nucleic acid binding;ATP binding;RNA
binding;helicases | chr1:28947887-28951526 REVERSE
LENGTH=845
Length = 845
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 113/187 (60%), Gaps = 15/187 (8%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKK 60
++ GY PTP+Q + +P+ L G +++ +A TGSGKT +FLIP+ +++L +
Sbjct: 43 IKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPM-----LEKLKQHVPQG 97
Query: 61 KPLAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPG 112
A++LSPTR+L Q + K +G ++VGGD+M Q + +G ++I+ATPG
Sbjct: 98 GVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPG 157
Query: 113 RLIDLLTK-HEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQ-PQVLMFTATITSD 170
RL+ LL++ ++ L V+ +V DE D + GF +Q+ QI LS+ Q L+F+AT+ S
Sbjct: 158 RLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPSA 217
Query: 171 IEKMANS 177
+ + A +
Sbjct: 218 LAEFAKA 224
>AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:9362176-9366449 REVERSE LENGTH=789
Length = 789
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 113/186 (60%), Gaps = 20/186 (10%)
Query: 2 EAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKK 61
E GY KPTP+Q IP+AL G +L A TGSGKT +F +P ++RLL+ P K+
Sbjct: 183 ETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPT-----LERLLFRP--KR 235
Query: 62 PLA---IVLSPTRELCIQIEEHAKAM--------GIVVGGDAMPGQVHRIQQGVELIVAT 110
A ++L+PTREL +QI + + G++VGG ++ Q ++ +++VAT
Sbjct: 236 VFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVAT 295
Query: 111 PGRLID-LLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATIT 168
PGR+ID L +DLDD+ L++DE D +LQ GF ++ ++ + + Q ++F+AT+T
Sbjct: 296 PGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMT 355
Query: 169 SDIEKM 174
+++++
Sbjct: 356 EEVKEL 361
>AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 98/172 (56%), Gaps = 16/172 (9%)
Query: 5 GYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPLA 64
G++KP+P+Q ++IPIAL G+++L A G+GKT +F IP++ + DPN A
Sbjct: 143 GFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKI-------DPNNNVIQA 195
Query: 65 IVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRLID 116
++L PTREL +Q + K + + GG ++ + R+ Q V L+V TPGR++D
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILD 255
Query: 117 LLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQ-PQVLMFTATI 167
L K L D LV+DE D +L F+ + ++ Q L Q Q LMF+AT
Sbjct: 256 LTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATF 307
>AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 98/172 (56%), Gaps = 16/172 (9%)
Query: 5 GYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPLA 64
G++KP+P+Q ++IPIAL G+++L A G+GKT +F IP++ + DPN A
Sbjct: 143 GFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKI-------DPNNNVIQA 195
Query: 65 IVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRLID 116
++L PTREL +Q + K + + GG ++ + R+ Q V L+V TPGR++D
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILD 255
Query: 117 LLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQ-PQVLMFTATI 167
L K L D LV+DE D +L F+ + ++ Q L Q Q LMF+AT
Sbjct: 256 LTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATF 307
>AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:16069669-16071405 REVERSE LENGTH=542
Length = 542
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 119/219 (54%), Gaps = 18/219 (8%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDP--N 58
++ G PTP+Q+Q +P+ L G +++ +A TGSGKT F++P++ +Q + P
Sbjct: 112 LKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMII-LALQEEIMMPIAA 170
Query: 59 KKKPLAIVLSPTRELCIQ----IEEHAKAMG----------IVVGGDAMPGQVHRIQQGV 104
+ P+A+V+ P+REL Q +E+ ++ + +GG M Q+ +++GV
Sbjct: 171 GEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGV 230
Query: 105 ELIVATPGRLIDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMF 163
++VATPGRL D+L K ++ LD + L +DE D ++ GF D + ++ SQ Q L+F
Sbjct: 231 HIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLF 290
Query: 164 TATITSDIEKMANSLAKDIAVVTVGNPNCPNKAVKQSCE 202
+AT+ + I+ A S V VG N V Q E
Sbjct: 291 SATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVE 329
>AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr5:20841456-20843645 FORWARD LENGTH=591
Length = 591
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 117/219 (53%), Gaps = 18/219 (8%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDP--N 58
++ G +PTP+Q+Q +P+ L G +++ +A TGSGKT F++P++ +Q + P
Sbjct: 161 LKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIM-IALQEEMMMPIAA 219
Query: 59 KKKPLAIVLSPTRELCIQIEEHAKAMG--------------IVVGGDAMPGQVHRIQQGV 104
+ P+ +++ P+REL Q E + + +GG M Q+ +++GV
Sbjct: 220 GEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGV 279
Query: 105 ELIVATPGRLIDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMF 163
++VATPGRL D+L K ++ LD + L +DE D ++ GF D + +++ SQ Q L+F
Sbjct: 280 HIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLF 339
Query: 164 TATITSDIEKMANSLAKDIAVVTVGNPNCPNKAVKQSCE 202
+AT+ + I+ A S V VG N V Q E
Sbjct: 340 SATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVE 378
>AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:24546601-24549148 REVERSE LENGTH=456
Length = 456
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 110/197 (55%), Gaps = 19/197 (9%)
Query: 2 EAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKK 61
E G+ P+ +Q +A+P AL+G +++ LA TGSGKT +F IPI+ + +YD KK
Sbjct: 25 ERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ--ALLEYVYDSEPKK 82
Query: 62 P-------LAIVLSPTRELCIQIEEHAKAMG--IVVGGDAMPGQVHRIQQGVEL------ 106
A VLSPTREL IQI E +A+G I + + G + R+QQ + L
Sbjct: 83 GRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHV 142
Query: 107 IVATPGRLIDLLTKHE-IDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALS-QPQVLMFT 164
IVATPGRL D ++ + L +K LV+DE D +L F + QI + + + + +F+
Sbjct: 143 IVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFS 202
Query: 165 ATITSDIEKMANSLAKD 181
AT+T + K+ + ++
Sbjct: 203 ATMTKKVRKLQRACLRN 219
>AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family
protein | chr1:11479921-11482707 FORWARD LENGTH=537
Length = 537
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 102/184 (55%), Gaps = 11/184 (5%)
Query: 6 YDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSEC--GIQRLLYDPNKKKPL 63
++KP+P+Q P L G +L+ +A TGSGKT +F IP + +++ K P
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 193
Query: 64 AIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRLI 115
+VLSPTREL +QI + + G V GG + Q+ I+ GV++++ TPGRL
Sbjct: 194 CLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLR 253
Query: 116 DLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQ-PQVLMFTATITSDIEKM 174
DL+ + + L DV +V+DE D ML GF + V I ++ Q++MF+AT D+ K+
Sbjct: 254 DLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKL 313
Query: 175 ANSL 178
A
Sbjct: 314 AQEF 317
>AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:18859836-18862318 FORWARD LENGTH=528
Length = 528
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 16/192 (8%)
Query: 5 GYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPLA 64
G++KP+P+Q ++IPIAL G+++L A G+GKT +F IP + + DP A
Sbjct: 173 GFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKI-------DPENNVIQA 225
Query: 65 IVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRLID 116
++L PTREL +Q + K + + GG ++ + R+ Q V L+V TPGR++D
Sbjct: 226 VILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILD 285
Query: 117 LLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQP-QVLMFTATITSDIEKMA 175
L K L D LV+DE D +L F+ + ++ Q L + Q+LMF+AT ++
Sbjct: 286 LAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFK 345
Query: 176 NSLAKDIAVVTV 187
+ K ++ +
Sbjct: 346 DRYLKKPYIINL 357
>AT1G16280.1 | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 |
chr1:5568482-5570487 REVERSE LENGTH=491
Length = 491
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 106/183 (57%), Gaps = 21/183 (11%)
Query: 5 GYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPLA 64
G KPTPVQ +P L G ++L LA TGSGKT +F +PI + RL DP A
Sbjct: 77 GMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPI-----LHRLAEDPY--GVFA 129
Query: 65 IVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRLID 116
+V++PTREL Q+ E KA+G ++VGG M Q + +++ TPGR I
Sbjct: 130 LVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGR-IK 188
Query: 117 LLTKHEIDLDDV----KTLVVDEVDCMLQRGFRDQVLQIYQALSQP-QVLMFTATITSDI 171
+L ++ D+ V K LV+DE D +L GF+D++ I+Q L + Q L+F+AT+TS++
Sbjct: 189 VLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNL 248
Query: 172 EKM 174
+ +
Sbjct: 249 QAL 251
>AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:27378040-27379593 REVERSE LENGTH=414
Length = 414
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 102/174 (58%), Gaps = 16/174 (9%)
Query: 3 AAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKP 62
A G++KP+ +Q + I KG +++ A +G+GKT +F ++ + I + +
Sbjct: 58 AYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLV-------QC 110
Query: 63 LAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRL 114
A+VL+PTREL QIE+ +A+G VGG ++ +Q GV ++V TPGR+
Sbjct: 111 QALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRV 170
Query: 115 IDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATI 167
DLL + + D +K V+DE D ML RGF+DQ+ I+Q L S+ QV +F+AT+
Sbjct: 171 FDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATM 224
>AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 107 bits (267), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 104/192 (54%), Gaps = 16/192 (8%)
Query: 5 GYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPLA 64
G+++P+P+Q ++IPIAL G ++L A G+GKT +F IP++ + D + A
Sbjct: 150 GFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKI-------DQDNNVIQA 202
Query: 65 IVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRLID 116
+++ PTREL +Q + K +G + GG ++ + R+ Q V L+V TPGR++D
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILD 262
Query: 117 LLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQP-QVLMFTATITSDIEKMA 175
L K L D LV+DE D +L + F+ V + L + Q+LMF+AT ++
Sbjct: 263 LTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFK 322
Query: 176 NSLAKDIAVVTV 187
+ + V+ +
Sbjct: 323 DRFLTNPYVINL 334
>AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 107 bits (267), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 104/192 (54%), Gaps = 16/192 (8%)
Query: 5 GYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPLA 64
G+++P+P+Q ++IPIAL G ++L A G+GKT +F IP++ + D + A
Sbjct: 150 GFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKI-------DQDNNVIQA 202
Query: 65 IVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRLID 116
+++ PTREL +Q + K +G + GG ++ + R+ Q V L+V TPGR++D
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILD 262
Query: 117 LLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQP-QVLMFTATITSDIEKMA 175
L K L D LV+DE D +L + F+ V + L + Q+LMF+AT ++
Sbjct: 263 LTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFK 322
Query: 176 NSLAKDIAVVTV 187
+ + V+ +
Sbjct: 323 DRFLTNPYVINL 334
>AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594094 REVERSE
LENGTH=402
Length = 402
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 102/174 (58%), Gaps = 16/174 (9%)
Query: 3 AAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKP 62
A G++KP+ +Q + I KG +++ A +G+GKT +F ++ + D + +
Sbjct: 46 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL-------DFSLIQC 98
Query: 63 LAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRL 114
A+VL+PTREL QIE+ +A+G VGG ++ +Q GV ++V TPGR+
Sbjct: 99 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRV 158
Query: 115 IDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATI 167
D+L + + D++K V+DE D ML RGF+DQ+ I+Q L + QV +F+AT+
Sbjct: 159 FDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATM 212
>AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592586-4594128 REVERSE
LENGTH=415
Length = 415
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 102/174 (58%), Gaps = 16/174 (9%)
Query: 3 AAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKP 62
A G++KP+ +Q + I KG +++ A +G+GKT +F ++ + D + +
Sbjct: 56 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL-------DFSLIQC 108
Query: 63 LAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRL 114
A+VL+PTREL QIE+ +A+G VGG ++ +Q GV ++V TPGR+
Sbjct: 109 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRV 168
Query: 115 IDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATI 167
D+L + + D++K V+DE D ML RGF+DQ+ I+Q L + QV +F+AT+
Sbjct: 169 FDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATM 222
>AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594128 REVERSE
LENGTH=412
Length = 412
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 102/174 (58%), Gaps = 16/174 (9%)
Query: 3 AAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKP 62
A G++KP+ +Q + I KG +++ A +G+GKT +F ++ + D + +
Sbjct: 56 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL-------DFSLIQC 108
Query: 63 LAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRL 114
A+VL+PTREL QIE+ +A+G VGG ++ +Q GV ++V TPGR+
Sbjct: 109 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRV 168
Query: 115 IDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATI 167
D+L + + D++K V+DE D ML RGF+DQ+ I+Q L + QV +F+AT+
Sbjct: 169 FDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATM 222
>AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor
4A-III | chr3:6863790-6866242 FORWARD LENGTH=408
Length = 408
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 114/204 (55%), Gaps = 16/204 (7%)
Query: 5 GYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPLA 64
G++KP+ +Q +A+ L+G +++ A +G+GKT + + C + D + ++ A
Sbjct: 54 GFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSV---CQV----VDTSSREVQA 106
Query: 65 IVLSPTRELCIQIEEHAKAMGI--------VVGGDAMPGQVHRIQQGVELIVATPGRLID 116
++LSPTREL Q E+ +A+G+ +GG+++ + +++ GV ++ TPGR+ D
Sbjct: 107 LILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCD 166
Query: 117 LLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATITSDIEKMA 175
++ + + +K L++DE D ML RGF+DQ+ +Y+ L QV + +AT+ +I +M
Sbjct: 167 MIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMT 226
Query: 176 NSLAKDIAVVTVGNPNCPNKAVKQ 199
+ + + V + +KQ
Sbjct: 227 SKFMTEPVKILVKRDELTLEGIKQ 250
>AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiation
factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=407
Length = 407
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 101/172 (58%), Gaps = 16/172 (9%)
Query: 5 GYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPLA 64
G++KP+ +Q + I KG +++ A +G+GKT +F ++ + D + + A
Sbjct: 53 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL-------DFSLIQCQA 105
Query: 65 IVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRLID 116
+VL+PTREL QIE+ +A+G VGG ++ +Q GV ++V TPGR+ D
Sbjct: 106 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 165
Query: 117 LLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATI 167
+L + + D++K V+DE D ML RGF+DQ+ I+Q L + QV +F+AT+
Sbjct: 166 MLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATM 217
>AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA
helicase 2 | chr3:7892641-7895145 FORWARD LENGTH=616
Length = 616
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 108/181 (59%), Gaps = 8/181 (4%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKK 60
+ + G +K P+Q + A++G +++ A TG+GKT +F IPI+ + I+ +
Sbjct: 119 LSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI-IKYNAKHGRGR 177
Query: 61 KPLAIVLSPTRELCIQIE----EHAKAMGIV--VGGDAMPGQVHRIQQGVELIVATPGRL 114
PL +VL+PTREL Q+E E A ++ + GG + Q+ ++ GV++ V TPGR+
Sbjct: 178 NPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRV 237
Query: 115 IDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATITSDIEK 173
IDL+ + ++L +V+ +V+DE D MLQ GF + V I + L + Q +MF+AT+ S I
Sbjct: 238 IDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRS 297
Query: 174 M 174
+
Sbjct: 298 L 298
>AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA
helicase 1 | chr3:7887382-7889806 FORWARD LENGTH=610
Length = 610
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 107/181 (59%), Gaps = 8/181 (4%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKK 60
++ G +K P+Q + A++G +++ A TG+GKT +F IPI+ + I+ K
Sbjct: 131 LKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI-IKFNAKHGRGK 189
Query: 61 KPLAIVLSPTRELCIQIE----EHAKAMGIV--VGGDAMPGQVHRIQQGVELIVATPGRL 114
P +VL+PTREL Q+E E A ++ + GG + Q+ + G+++ V TPGR+
Sbjct: 190 NPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPGRI 249
Query: 115 IDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATITSDIEK 173
IDL+ + ++L +V+ +V+DE D MLQ GF + V I Q L ++ Q +MF+AT+ S I
Sbjct: 250 IDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRS 309
Query: 174 M 174
+
Sbjct: 310 L 310
>AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:19047960-19049967 FORWARD LENGTH=392
Length = 392
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 109/204 (53%), Gaps = 16/204 (7%)
Query: 5 GYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPLA 64
GY KP+ +Q +A+ LKG +++ A +G+GKT I + C I + + +K
Sbjct: 41 GYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISV---CQIVNI----SSRKVQV 93
Query: 65 IVLSPTRELCIQIEEHAKAMGI--------VVGGDAMPGQVHRIQQGVELIVATPGRLID 116
+VLSP+REL Q E+ +A+G +GG ++ + ++++GV + TPGR+ D
Sbjct: 94 LVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYD 153
Query: 117 LLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQP-QVLMFTATITSDIEKMA 175
++ + + VK LV+DE D ML +G +DQ+ +Y+AL QV + +AT+ +I +M
Sbjct: 154 MIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMT 213
Query: 176 NSLAKDIAVVTVGNPNCPNKAVKQ 199
D + V + +KQ
Sbjct: 214 EKFMTDPVRILVKPDELTLEGIKQ 237
>AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=412
Length = 412
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 100/174 (57%), Gaps = 16/174 (9%)
Query: 3 AAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKP 62
A G++KP+ +Q + I KG +++ A +G+GKT +F ++ + L +
Sbjct: 56 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALL-------QC 108
Query: 63 LAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRL 114
A+VL+PTREL QIE+ +A+G VGG ++ +Q GV ++V TPGR+
Sbjct: 109 QALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRV 168
Query: 115 IDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATI 167
D+L + + D +K V+DE D ML RGF+DQ+ I+Q L + QV +F+AT+
Sbjct: 169 FDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATM 222
>AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2980483-2983268
REVERSE LENGTH=541
Length = 541
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 105/203 (51%), Gaps = 14/203 (6%)
Query: 5 GYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPLA 64
G+ +PTP+Q QAIPI L G A TGSGKT +F+ P++ + L P+ A
Sbjct: 160 GFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIK------LKRPSTDGIRA 213
Query: 65 IVLSPTRELCIQIEEHAKAM------GIVVGGDAMPGQVHRIQQGVELIVATPGRLIDLL 118
++LSP REL Q K + I + + + +++++TP RL +
Sbjct: 214 VILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKTADFSKLWCDVLISTPMRLKRAI 273
Query: 119 TKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQPQVL--MFTATITSDIEKMAN 176
+IDL V+ LV+DE D + ++ Q+ + +A S P ++ +F+AT+ +E++A
Sbjct: 274 KAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEELAR 333
Query: 177 SLAKDIAVVTVGNPNCPNKAVKQ 199
S+ D V +G N ++ VKQ
Sbjct: 334 SIMHDAVRVIIGRKNTASETVKQ 356
>AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=407
Length = 407
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 99/172 (57%), Gaps = 16/172 (9%)
Query: 5 GYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPLA 64
G++KP+ +Q + I KG +++ A +G+GKT +F ++ + L + A
Sbjct: 53 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALL-------QCQA 105
Query: 65 IVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGVELIVATPGRLID 116
+VL+PTREL QIE+ +A+G VGG ++ +Q GV ++V TPGR+ D
Sbjct: 106 LVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 165
Query: 117 LLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATI 167
+L + + D +K V+DE D ML RGF+DQ+ I+Q L + QV +F+AT+
Sbjct: 166 MLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATM 217
>AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:26358328-26361244 FORWARD LENGTH=633
Length = 633
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 117/207 (56%), Gaps = 15/207 (7%)
Query: 5 GYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPLA 64
G+ + T +Q +AIP + G ++L A TGSGKT +FLIP V + R+ + P +
Sbjct: 173 GFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVE--LLYRVKFTPRNGTGV- 229
Query: 65 IVLSPTRELCIQ--------IEEHAKAMGIVVGGDAMPGQVHRIQQGVELIVATPGRLID 116
+V+ PTREL IQ ++ H++ +G V+GG+ + + +GV L+VATPGRL+D
Sbjct: 230 LVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLD 289
Query: 117 LL-TKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQP-QVLMFTATITSDIEKM 174
L + ++K LV+DE D +L++ F + + +I L + Q +F+AT ++ +E +
Sbjct: 290 HLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVEDL 349
Query: 175 AN-SLAKDIAV-VTVGNPNCPNKAVKQ 199
A SL + + V G N+ ++Q
Sbjct: 350 ARVSLTSPVYIDVDEGRKEVTNEGLEQ 376
>AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=748
Length = 748
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 105/185 (56%), Gaps = 10/185 (5%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIV---SECGIQRLLYDP 57
+E G P+Q + AL+G +++ A TG+GKT +F IPI+ +E +
Sbjct: 117 LEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRR 176
Query: 58 NKKKPLAIVLSPTRELCIQIEEHAKAMG------IVVGGDAMPGQVHRIQQGVELIVATP 111
+ + P +VL+PTREL Q+E+ K V GG + Q + +GV+++V TP
Sbjct: 177 SGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTP 236
Query: 112 GRLIDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATITSD 170
GR+IDL+ + L +V+ LV+DE D ML GF + V I + L ++ Q ++F+AT+ +
Sbjct: 237 GRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTW 296
Query: 171 IEKMA 175
++K+A
Sbjct: 297 VKKLA 301
>AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=747
Length = 747
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 105/185 (56%), Gaps = 10/185 (5%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIV---SECGIQRLLYDP 57
+E G P+Q + AL+G +++ A TG+GKT +F IPI+ +E +
Sbjct: 117 LEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRR 176
Query: 58 NKKKPLAIVLSPTRELCIQIEEHAKAMG------IVVGGDAMPGQVHRIQQGVELIVATP 111
+ + P +VL+PTREL Q+E+ K V GG + Q + +GV+++V TP
Sbjct: 177 SGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTP 236
Query: 112 GRLIDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATITSD 170
GR+IDL+ + L +V+ LV+DE D ML GF + V I + L ++ Q ++F+AT+ +
Sbjct: 237 GRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTW 296
Query: 171 IEKMA 175
++K+A
Sbjct: 297 VKKLA 301
>AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:16976783-16979392
FORWARD LENGTH=609
Length = 609
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 108/215 (50%), Gaps = 28/215 (13%)
Query: 2 EAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKK 61
E G++ PT VQ QAIP+ L G ++LV A TG+GKT ++L P++ D
Sbjct: 46 ERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVD-RSHG 104
Query: 62 PLAIVLSPTRELCIQIEE---------HAKAMGIVVGGDAMPGQVHRIQQGVELIVATPG 112
A+V+ PTRELC+Q+ E H G V+GG+ + R+++G+ +++ATPG
Sbjct: 105 TFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPG 164
Query: 113 RLIDLLTK-HEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALS--------------- 156
RL+D L +++ ++ DE D +L+ G+ ++ QI + L
Sbjct: 165 RLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDDIVPK 224
Query: 157 --QPQVLMFTATITSDIEKMANSLAKDIAVVTVGN 189
Q Q L+ +AT+ + +A D ++ + N
Sbjct: 225 GIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDN 259
>AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:6399724-6403007
REVERSE LENGTH=568
Length = 568
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 109/197 (55%), Gaps = 23/197 (11%)
Query: 5 GYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPLA 64
G+ T +Q +I L+G ++L A TGSGKT +FLIP V +R + P +
Sbjct: 108 GFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKER--FSPRNGTGV- 164
Query: 65 IVLSPTRELCIQ--------IEEHAKAMGIVVGGDAMPGQVHRIQQGVELIVATPGRLID 116
IV+ PTREL IQ ++ H++ + +V+GG+ + RI G L++ATPGRL+D
Sbjct: 165 IVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLD 224
Query: 117 LL--TKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQP-QVLMFTATITSDIEK 173
L TK I +K LV+DE D +L+ F + + +I + L + Q +F+AT TS +
Sbjct: 225 HLQNTKAFI-YKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKV-- 281
Query: 174 MANSLAKDIAVVTVGNP 190
KD+A V++ +P
Sbjct: 282 ------KDLARVSLTSP 292
>AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25472598-25476402
REVERSE LENGTH=788
Length = 788
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 103/187 (55%), Gaps = 17/187 (9%)
Query: 4 AGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKP- 62
AGY+ T VQ +PI LKG ++L A TG+GKT +FL+P + E ++ P+ K+P
Sbjct: 338 AGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSI-EVVVKSPPTSPDNKRPP 396
Query: 63 -LAIVLSPTRELCIQIEEHAKAM---------GIVVGGDAMPGQVHRIQQG-VELIVATP 111
LA+V+ PTREL Q A + +V+GG + + R+Q +++VATP
Sbjct: 397 ILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATP 456
Query: 112 GRLIDLLTK---HEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATI 167
GRL D + L VK LV+DE D +L GFR + +I A+ + Q +F+AT+
Sbjct: 457 GRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSATV 516
Query: 168 TSDIEKM 174
++ ++
Sbjct: 517 PEEVRQI 523
>AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) |
chr5:24980542-24983879 REVERSE LENGTH=671
Length = 671
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 106/199 (53%), Gaps = 24/199 (12%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKK 60
++A G + P+Q + L G +L+ A TG GKT +F++PI ++ L+ P K
Sbjct: 111 LKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPI-----LESLVNGPAKS 165
Query: 61 K--------PLAIVLSPTRELCIQIEEHAKAMG--------IVVGGDAMPGQVHRIQQGV 104
K P +VL PTREL Q+ A G + GGD+ P Q ++++GV
Sbjct: 166 KRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGV 225
Query: 105 ELIVATPGRLIDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQV---LQIYQALSQPQVL 161
+++V TPGR+ D + + +D ++ V+DE D ML+ GF + V L + ++ Q L
Sbjct: 226 DIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTL 285
Query: 162 MFTATITSDIEKMANSLAK 180
+F+AT+ S ++ ++N K
Sbjct: 286 LFSATLPSWVKNISNRFLK 304
>AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:2790341-2794059
FORWARD LENGTH=850
Length = 850
Score = 96.7 bits (239), Expect = 1e-20, Method: Composition-based stats.
Identities = 67/198 (33%), Positives = 109/198 (55%), Gaps = 18/198 (9%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKK 60
++ AG++ T VQ +PI L+G ++L A TG+GKT +FL+P + E I+ + +
Sbjct: 397 IKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAI-EAVIKSPPASRDSR 455
Query: 61 KPLAIVL--SPTRELCIQIEEHAKAM---------GIVVGGDAMPGQVHRIQQG-VELIV 108
+P IVL PTREL Q A + +V+GG +P + R+Q +++V
Sbjct: 456 QPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILV 515
Query: 109 ATPGRLIDLL---TKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFT 164
ATPGRL D + + L VK LV+DE D +L GFR + +I A+ Q Q +F+
Sbjct: 516 ATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFS 575
Query: 165 ATITSDIEKMAN-SLAKD 181
AT+ ++ ++ + +L +D
Sbjct: 576 ATVPEEVRQICHVALKRD 593
>AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase
family protein | chr5:2794540-2797548 FORWARD LENGTH=563
Length = 563
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 114/209 (54%), Gaps = 23/209 (11%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKK 60
+E AG+ T VQ +P+ L+G ++L A TG+GKT +FL+P + E I+ + +
Sbjct: 95 IEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSI-EAVIKAPPASRDNR 153
Query: 61 KP--LAIVLSPTRELCIQIEEHAK---------AMGIVVGGDAMPGQVHRIQQG-VELIV 108
P + +V+ PTREL Q A + +V+GG +P + R+Q+ +++V
Sbjct: 154 HPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILV 213
Query: 109 ATPGRL---IDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFT 164
ATPGRL ID + L VK LV+DE D +L GFR ++ +I A+ Q Q +F+
Sbjct: 214 ATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFS 273
Query: 165 ATITSDIEKMAN-SLAKDIAVVTVGNPNC 192
AT++ ++ ++ + +L +D V NC
Sbjct: 274 ATVSDEVRQICHVALKRDHEFV-----NC 297
>AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:9843084-9845002
REVERSE LENGTH=614
Length = 614
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 114/211 (54%), Gaps = 33/211 (15%)
Query: 9 PTPVQ--MQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRL--LYDPNKKK-PL 63
P P++ + IP+ L+ +++ ++ TGSGKT +F++P+++ I RL + + N+ + P
Sbjct: 223 PHPMRNWEETIPLGLEQRDVIGISATGSGKTAAFVLPMLA--YISRLPPMREENQTEGPY 280
Query: 64 AIVLSPTRELCIQIEEH----AKAMGI----VVGGDAMPGQVHRIQQGVELIVATPGRLI 115
A+V+ PTREL QIEE ++ +G + G +++ Q ++ QG E+++ATPGRL+
Sbjct: 281 ALVMVPTRELAHQIEEETVKFSRYLGFKAVSITGWESIEKQALKLSQGCEIVIATPGRLL 340
Query: 116 DLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALS------------------Q 157
D L + + L+ LV+DE D M+ F QV ++ +
Sbjct: 341 DCLERRYVVLNQCNYLVLDEADRMIDMDFEPQVSEVLDVMPCSNLKPEKEDEELEEKKIY 400
Query: 158 PQVLMFTATITSDIEKMANSLAKDIAVVTVG 188
MF+AT+ +E++A ++ VVT+G
Sbjct: 401 RTTYMFSATMLLSVERLARKFLRNPVVVTIG 431
>AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:26897235-26899381 REVERSE LENGTH=558
Length = 558
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 115/214 (53%), Gaps = 13/214 (6%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKK 60
++ +G++ TPVQ + IP +++V A TGSGKT +FL+P + E + Y P
Sbjct: 31 LDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI-EIIRRSNSYPPKPH 89
Query: 61 KPLAIVLSPTRELCIQIEEHAKAM---------GIVVGGDAMPGQVHRI-QQGVELIVAT 110
+ + +++SPTREL QI + A+ ++VGG + ++ + ++G L++ T
Sbjct: 90 QVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGT 149
Query: 111 PGRLIDLLTKHE-IDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATIT 168
PGRL D++ + E +D +++ L++DE D +L GF+ QV I L Q + +F+AT T
Sbjct: 150 PGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQT 209
Query: 169 SDIEKMANSLAKDIAVVTVGNPNCPNKAVKQSCE 202
+ +A + ++ V G + + CE
Sbjct: 210 QAVADLAKAGLRNAMEVISGAESKSKTSSGLYCE 243
>AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288618 REVERSE LENGTH=655
Length = 655
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 98/167 (58%), Gaps = 10/167 (5%)
Query: 20 ALKGTNLLVLADTGSGKTDSFLIPIV---SECGIQRLLYDPNKKKPLAIVLSPTRELCIQ 76
AL+G +++ A TG+GKT +F IPI+ +E + + + P +VL+PTREL Q
Sbjct: 43 ALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQ 102
Query: 77 IEEHAKAMG------IVVGGDAMPGQVHRIQQGVELIVATPGRLIDLLTKHEIDLDDVKT 130
+E+ K V GG + Q + +GV+++V TPGR+IDL+ + L +V+
Sbjct: 103 VEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEY 162
Query: 131 LVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATITSDIEKMAN 176
LV+DE D ML GF + V I + L ++ Q ++F+AT+ + ++K+A
Sbjct: 163 LVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLAR 209
>AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:26870262-26872152 REVERSE LENGTH=465
Length = 465
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 118/211 (55%), Gaps = 13/211 (6%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKK 60
++ +G++ TPVQ + IP +++V A TGSGKT +FL+P + E + Y P
Sbjct: 32 LDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI-EIIRRSNSYPPKPH 90
Query: 61 KPLAIVLSPTRELCIQIEEHAKAMGI-VVGGDAMPGQVHRI-QQGVELIVATPGRLIDLL 118
+ + +++SPTREL QI + A+A+ + + ++ + ++G L++ TPGRL D++
Sbjct: 91 QVMGVIISPTRELSAQIHKVARAVRLDFAKCREVEADMNTLEEEGANLLIGTPGRLSDMM 150
Query: 119 TKHE-IDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATITSDIEKMAN 176
+ E +D +++ L++DE D +L GF+ QV I L Q + +F+AT T +
Sbjct: 151 KRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAV----- 205
Query: 177 SLAKDIAVVTVGNPNCPNKAVKQSCEVNNIL 207
D+A + NP +A ++S ++ ++L
Sbjct: 206 ---ADLAKAGLRNPYLKCEADQKSSQLVHLL 233
>AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:1612077-1615195
FORWARD LENGTH=593
Length = 593
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 102/180 (56%), Gaps = 13/180 (7%)
Query: 10 TPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPLAIVLSP 69
TPVQ IP+ ++ V A TGSGKT +F++P+V E + + P + + +++SP
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV-EILRRSTSFPPKPHQVMGVIISP 98
Query: 70 TRELCIQIEEHAKAM---------GIVVGGDAMPGQVHRI-QQGVELIVATPGRLIDLLT 119
TREL QI A+ ++VGG + + I ++G +++ TPGRL D++
Sbjct: 99 TRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRLSDIME 158
Query: 120 KHEI-DLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTATITSDIEKMANS 177
+ EI D +++ L++DE D +L+ GF+ QV I L Q + +F+AT T +E++A +
Sbjct: 159 RMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEGVEELAKA 218
>AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:5738020-5743042
REVERSE LENGTH=826
Length = 826
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 95/172 (55%), Gaps = 36/172 (20%)
Query: 6 YDKPTPVQMQAIPIA-LKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPL- 63
+ +PT +Q +A +G +++ A+TGSGKT +F +PI +QRLL + K L
Sbjct: 210 FKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPI-----LQRLLDEREKVGKLY 264
Query: 64 -----------------AIVLSPTRELCIQIEEH----AKAMGI----VVGGDAMPGQVH 98
A++++PTREL +Q+ EH AK + + +VGG Q
Sbjct: 265 ALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQER 324
Query: 99 RIQQGVELIVATPGRLIDLLT---KHEIDLDDVKTLVVDEVDCMLQRG-FRD 146
R+++ E++VATPGRL +L++ KH ++L + V+DE D M++RG FR+
Sbjct: 325 RLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRE 376
>AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWARD
LENGTH=621
Length = 621
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 19/187 (10%)
Query: 9 PTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVS--ECGIQRLLYDPNKKKPLAIV 66
PT +Q IP ++ ++++ + TGSGKT ++L+PIV L ++P +V
Sbjct: 135 PTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVV 194
Query: 67 LSPTRELCIQ-------IEEHAKAMGIVV-GGDAMPGQVHRIQQGVELIVATPGRLIDLL 118
L PTREL Q I HA+ I+V GG + Q + ++++V TPGR++ +
Sbjct: 195 LCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHI 254
Query: 119 TKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQP---------QVLMFTATITS 169
+ + D+ LV+DE D M RGF ++ + L+Q Q ++ TAT+T
Sbjct: 255 EEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTM 314
Query: 170 DIEKMAN 176
++K+ +
Sbjct: 315 AVQKLVD 321
>AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:23463284-23466451 REVERSE LENGTH=798
Length = 798
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 21/230 (9%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDP--N 58
+ A+G K T VQ + L G + LV A TG+GK+ +FL+P + E ++ + N
Sbjct: 343 LSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI-ETVLKAMNSGKGVN 401
Query: 59 KKKP-LAIVLSPTRELCIQIEEHAKAM-----GI----VVGGDAMPGQVHRIQ-QGVELI 107
K P A++L PTREL QI KA+ GI ++GG R++ + +++
Sbjct: 402 KVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQIL 461
Query: 108 VATPGRLIDLLTKHE---IDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMF 163
+ATPGRL+D + L +K +VDE D +L GFR V +I L Q Q L+F
Sbjct: 462 IATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLF 521
Query: 164 TATITSDIEKMAN-SLAKDIAVVTVGNPNC--PNKAVKQSCEVNNILSHL 210
+ATI ++ +++ L +D + + C + V+QSC V SH
Sbjct: 522 SATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVRQSCIVAPHESHF 571
>AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:3576483-3580396 FORWARD LENGTH=845
Length = 845
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 114/234 (48%), Gaps = 29/234 (12%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKK 60
+ A+G K T VQ + L G + LV A TG+GK+ +FL+P I+ +L N
Sbjct: 390 LSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLP-----AIETVLKAMNSG 444
Query: 61 KP-------LAIVLSPTRELCIQIEEHAKAM-----GI----VVGGDAMPGQVHRIQ-QG 103
K ++L PTREL QI KA+ GI ++GG R++ +
Sbjct: 445 KGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEP 504
Query: 104 VELIVATPGRLIDLLTKHE---IDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQ 159
++++ATPGRL+D + L +K +VDE D +L GF+ V +I L Q Q
Sbjct: 505 CQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQ 564
Query: 160 VLMFTATITSDIEKMAN-SLAKDIAVVTVGNPNC--PNKAVKQSCEVNNILSHL 210
L+F+ATI ++ +++ L +D + + C + VKQSC V SH
Sbjct: 565 SLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIVAPHESHF 618
>AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:4351888-4353543 FORWARD LENGTH=551
Length = 551
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 94/173 (54%), Gaps = 16/173 (9%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECG----IQRLLYD 56
+E G+ PT VQ A+P +KG + ++ + TGSGKT ++L+PI+SE G R +
Sbjct: 125 LEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHS 184
Query: 57 PNKKKP--LAIVLSPTRELCIQI-EEHAKAMG---------IVVGGDAMPGQVHRIQQGV 104
N K+ A++++P+REL +QI E K +G +V G + M + +
Sbjct: 185 ENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKP 244
Query: 105 ELIVATPGRLIDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQ 157
++V TPGR+ ++ ++ + LV+DEVD +L FR+ + +I + + +
Sbjct: 245 AIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGK 297
>AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr3:19687968-19690423 FORWARD LENGTH=496
Length = 496
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 94/203 (46%), Gaps = 32/203 (15%)
Query: 6 YDKPTPVQMQAIPIALK--GTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPL 63
++KP+ +Q ++P+ + +L+ A GSGKT F++ ++S DP ++P
Sbjct: 112 FEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRV-------DPTLREPQ 164
Query: 64 AIVLSPTRELCIQIEEHAKAMGIVVGGDA----------MPGQVHRIQQGVELIVATPGR 113
A+ + PTREL Q E + MG G A P +++ TPG
Sbjct: 165 ALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTPGT 224
Query: 114 LIDLLTKHEIDLDDVKTLVVDEVDCMLQR-GFRDQVLQIYQALSQP----QVLMFTATIT 168
L + + L+ +K LV DE D ML GFRD L+I + + + QVL+F+AT
Sbjct: 225 LKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSATF- 283
Query: 169 SDIEKMANSLAKDIAVVTVGNPN 191
N KD TV +PN
Sbjct: 284 -------NETVKDFVARTVKDPN 299
>AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:2201531-2204662 FORWARD LENGTH=781
Length = 781
Score = 78.6 bits (192), Expect = 4e-15, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 23/203 (11%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRL----LYD 56
++ +D+P +Q A + G + ++ +GSGKT ++L+P+ IQRL L
Sbjct: 389 LKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPV-----IQRLREEELQG 443
Query: 57 PNKKKP---LAIVLSPTRELCIQIEEHAKAMG---------IVVGGDAMPGQVHRIQQGV 104
+K P IVL PT EL Q+ + +++ +V GG Q+ ++QGV
Sbjct: 444 HSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGV 503
Query: 105 ELIVATPGRLIDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQ--IYQALSQPQVLM 162
++++ATPGR L+ + + L +++ ++DEVD + + LQ I + Q L
Sbjct: 504 DVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTAQYLF 563
Query: 163 FTATITSDIEKMANSLAKDIAVV 185
TAT+ +I + D VV
Sbjct: 564 VTATLPLEIYNKLVEVFPDCEVV 586
>AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:22298668-22301719 REVERSE LENGTH=739
Length = 739
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 103/201 (51%), Gaps = 21/201 (10%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKK 60
++ A Y T VQ AIP AL G ++L A TGSGKT +F+IPI+ + + R + P
Sbjct: 86 LKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEK--LHRERWSPEDG 143
Query: 61 KPLAIVLSPTRELCIQI--------EEHAKAMGIVVGG----DAMPGQVHRIQQGVELIV 108
I++SPTREL Q + H + G+++GG D +VH + ++V
Sbjct: 144 VG-CIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMN----ILV 198
Query: 109 ATPGRLIDLLTKH-EIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMFTAT 166
PGRL+ + + + ++ L++DE D +L F+ Q+ I L Q L+F+AT
Sbjct: 199 CAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSAT 258
Query: 167 ITSDIEKMANSLAKDIAVVTV 187
T ++ +A +D ++V
Sbjct: 259 QTKKVKDLARLSLRDPEYISV 279
>AT5G19210.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:6461444-6463687
FORWARD LENGTH=472
Length = 472
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 94/185 (50%), Gaps = 25/185 (13%)
Query: 1 MEAAGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKK 60
ME G+ PT +Q +A+P G + ++ A TGSGKT ++L+ I S L +P +
Sbjct: 91 MEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFS-------LINPQRS 143
Query: 61 KPLAIVLSPTRELCIQIEEHAKAMGI-----VVGGDAMP----GQVHRIQQGVE-----L 106
A+++ PTREL +Q+ + A+ + V G M G + R + ++ +
Sbjct: 144 SVQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAI 203
Query: 107 IVATPGRLIDLLTKHEIDLDDVKTLVVDEVDCML----QRGFRDQVLQIYQALSQPQVLM 162
+VAT L +L KH +D V+ LVVDEVD + Q G ++L + + + Q +
Sbjct: 204 LVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTVF 263
Query: 163 FTATI 167
+A+I
Sbjct: 264 ASASI 268
>AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:16631661-16634834
FORWARD LENGTH=626
Length = 626
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 106/212 (50%), Gaps = 24/212 (11%)
Query: 5 GYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLY--DPNKKK- 61
G +KPT +Q AIP L+G +++ A TGSGKT ++L+P+ +Q+L +KKK
Sbjct: 65 GIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPL-----LQKLFSADSVSKKKL 119
Query: 62 -PLAIVLSPTRELCIQIEEHAKAM---------GIVVGGDAMPGQVHRIQQGV-ELIVAT 110
P A +L P+RELC Q+ ++ + + + G+ E++V+T
Sbjct: 120 APSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVST 179
Query: 111 PGRLIDLLTKHEID----LDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQP-QVLMFTA 165
P + ++ + + LV+DE D +L G+ D + + + + Q L+ +A
Sbjct: 180 PACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSA 239
Query: 166 TITSDIEKMANSLAKDIAVVTVGNPNCPNKAV 197
T +SD+EK+ + + V+T+ N +AV
Sbjct: 240 TTSSDVEKLKKLILHNPIVLTLTEDNDKEEAV 271
>AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=486
Length = 486
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 100/193 (51%), Gaps = 23/193 (11%)
Query: 4 AGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPL 63
+G++ P+ VQ + IP A+ G +++ A +G GKT F++ + + +P+ +
Sbjct: 64 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQI-------EPSPGQVS 116
Query: 64 AIVLSPTRELCIQI-EEHAK--------AMGIVVGGDAMPGQVHR---IQQGVELIVATP 111
A+VL TREL QI E + + + GG + ++H+ + ++V TP
Sbjct: 117 ALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNI--KIHKDLLKNECPHIVVGTP 174
Query: 112 GRLIDLLTKHEIDLDDVKTLVVDEVDCMLQR-GFRDQVLQIYQALSQ-PQVLMFTATITS 169
GR++ L + ++ L +V+ ++DE D ML+ R V +I++ QV+MF+AT++
Sbjct: 175 GRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234
Query: 170 DIEKMANSLAKDI 182
+I + +D
Sbjct: 235 EIRPVCKKFMQDF 247
>AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=468
Length = 468
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 100/192 (52%), Gaps = 23/192 (11%)
Query: 4 AGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPL 63
+G++ P+ VQ + IP A+ G +++ A +G GKT F++ + + +P+ +
Sbjct: 64 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQI-------EPSPGQVS 116
Query: 64 AIVLSPTRELCIQI-EEHAK--------AMGIVVGGDAMPGQVHR---IQQGVELIVATP 111
A+VL TREL QI E + + + GG + ++H+ + ++V TP
Sbjct: 117 ALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNI--KIHKDLLKNECPHIVVGTP 174
Query: 112 GRLIDLLTKHEIDLDDVKTLVVDEVDCMLQR-GFRDQVLQIYQALSQ-PQVLMFTATITS 169
GR++ L + ++ L +V+ ++DE D ML+ R V +I++ QV+MF+AT++
Sbjct: 175 GRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234
Query: 170 DIEKMANSLAKD 181
+I + +D
Sbjct: 235 EIRPVCKKFMQD 246
>AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3553334-3556646 FORWARD LENGTH=427
Length = 427
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 100/192 (52%), Gaps = 23/192 (11%)
Query: 4 AGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPL 63
+G++ P+ VQ + IP A+ G +++ A +G GKT F++ + + +P+ +
Sbjct: 64 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQI-------EPSPGQVS 116
Query: 64 AIVLSPTRELCIQI-EEHAK--------AMGIVVGGDAMPGQVHR---IQQGVELIVATP 111
A+VL TREL QI E + + + GG + ++H+ + ++V TP
Sbjct: 117 ALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNI--KIHKDLLKNECPHIVVGTP 174
Query: 112 GRLIDLLTKHEIDLDDVKTLVVDEVDCMLQR-GFRDQVLQIYQALSQ-PQVLMFTATITS 169
GR++ L + ++ L +V+ ++DE D ML+ R V +I++ QV+MF+AT++
Sbjct: 175 GRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234
Query: 170 DIEKMANSLAKD 181
+I + +D
Sbjct: 235 EIRPVCKKFMQD 246
>AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=427
Length = 427
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 100/192 (52%), Gaps = 23/192 (11%)
Query: 4 AGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPL 63
+G++ P+ VQ + IP A+ G +++ A +G GKT F++ + + +P+ +
Sbjct: 64 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQI-------EPSPGQVS 116
Query: 64 AIVLSPTRELCIQI-EEHAK--------AMGIVVGGDAMPGQVHR---IQQGVELIVATP 111
A+VL TREL QI E + + + GG + ++H+ + ++V TP
Sbjct: 117 ALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNI--KIHKDLLKNECPHIVVGTP 174
Query: 112 GRLIDLLTKHEIDLDDVKTLVVDEVDCMLQR-GFRDQVLQIYQALSQ-PQVLMFTATITS 169
GR++ L + ++ L +V+ ++DE D ML+ R V +I++ QV+MF+AT++
Sbjct: 175 GRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234
Query: 170 DIEKMANSLAKD 181
+I + +D
Sbjct: 235 EIRPVCKKFMQD 246
>AT1G59990.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:22090369-22092885 REVERSE LENGTH=581
Length = 581
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 26/173 (15%)
Query: 4 AGYDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYD------- 56
+G+D+P+ Q IP L G +++V A+TGSGKT +L PI+ + L +
Sbjct: 98 SGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREER 157
Query: 57 PNKKKPLAIVLSPTRELCIQIEEHAKAMGIVVGGDAMPGQVHRIQ-----QGV-----EL 106
P K ++++L P LC Q+ + + +V D P + R++ QG ++
Sbjct: 158 PFPLKNISLILCPNVMLCEQV---VRMVNGLVDEDGNP--LLRVEAVCGSQGWPDRLPDI 212
Query: 107 IVATPGRLIDLLT-KHEIDLDD---VKTLVVDEVDCMLQRGFRDQVLQIYQAL 155
IV+TP L++ + K L+ VK +V DE D +L F++Q++++ L
Sbjct: 213 IVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINML 265
>AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 |
chr4:9001426-9004534 FORWARD LENGTH=522
Length = 522
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 39/178 (21%)
Query: 25 NLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPLAIVLSPTRELCIQIEEHAKAM 84
++ V + TGSGKT S+ +PIV +LL + A+V+ PTR+L +Q+++ A+
Sbjct: 74 DICVNSPTGSGKTLSYALPIV------QLLASRPVRCLRALVVLPTRDLALQVKDVFDAI 127
Query: 85 --------GIVVGGDAMPGQVHRI---------------------QQGVELIVATPGRLI 115
G VG ++ G++ ++ + V+++VATPGRL+
Sbjct: 128 APAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLM 187
Query: 116 DLLTKHE-IDLDDVKTLVVDEVDCMLQRGFRD---QVLQIYQALSQPQVLMFTATITS 169
D + + L+ ++ LVVDE D +L+ ++ VLQ+ Q FT + S
Sbjct: 188 DHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPS 245
>AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3554272-3556646 FORWARD LENGTH=344
Length = 344
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 83/166 (50%), Gaps = 23/166 (13%)
Query: 30 ADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPLAIVLSPTRELCIQI-EEHAK------ 82
A +G GKT F++ + + +P+ + A+VL TREL QI E +
Sbjct: 7 AKSGMGKTAVFVLSTLQQI-------EPSPGQVSALVLCHTRELAYQICNEFVRFSTYLP 59
Query: 83 --AMGIVVGGDAMPGQVHR---IQQGVELIVATPGRLIDLLTKHEIDLDDVKTLVVDEVD 137
+ + GG + ++H+ + ++V TPGR++ L + ++ L +V+ ++DE D
Sbjct: 60 DTKVSVFYGGVNI--KIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECD 117
Query: 138 CMLQR-GFRDQVLQIYQAL-SQPQVLMFTATITSDIEKMANSLAKD 181
ML+ R V +I++ QV+MF+AT++ +I + +D
Sbjct: 118 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQD 163
>AT2G28600.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:12251845-12254672
FORWARD LENGTH=502
Length = 502
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 105 ELIVATPGRLIDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQAL-SQPQVLMF 163
E IVATP RL++++T +D+ +V LV+DE+ + G+ + V I QA+ S+ Q ++F
Sbjct: 248 EFIVATPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVF 307
Query: 164 TATITSDI 171
+ ++ I
Sbjct: 308 NNSFSASI 315