Miyakogusa Predicted Gene

Lj0g3v0093459.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0093459.1 Non Chatacterized Hit- tr|I1HCS0|I1HCS0_BRADI
Uncharacterized protein OS=Brachypodium distachyon GN=,36.9,4e-17,
,CUFF.5142.1
         (172 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71780.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   198   2e-51

>AT1G71780.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endoplasmic
           reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED
           DURING: 15 growth stages; Has 34 Blast hits to 34
           proteins in 11 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:26995406-26996638 REVERSE LENGTH=197
          Length = 197

 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 97/190 (51%), Positives = 134/190 (70%), Gaps = 21/190 (11%)

Query: 2   EEEKAPLIGEIEETSQVSNTTESERHVRT-----KVPEVEIHLFRQGKGPVAVFXD---- 52
           E +  P   EIEET+ +   ++ E  +R+     KVPEVEIHL++ GKGP+ VF      
Sbjct: 10  ERDPPPPHQEIEETTPLLENSQPESELRSTTAAAKVPEVEIHLYKCGKGPIDVFKSNLGG 69

Query: 53  ----------ILDKHGFKSLYAFNPQFRSRGVPVRFNPRNGRSLLTYRDGVVVYLDGEPK 102
                     IL+K+G K+++AFN + + R VP+RF+PRNGRS+L YRDG V+Y+DGEP+
Sbjct: 70  YEQDQLEVRSILEKYGLKAIFAFNVE-KGRAVPIRFHPRNGRSVLPYRDGAVIYIDGEPQ 128

Query: 103 DSLVQPVTRILIGVAVVTLMITILSRDTPEWMKKLNVSSVNFPPWILACVVIVFTRMRKR 162
           DSL++P+TRI++GV +VTL+IT L +D P W+K  N+S   FPPW+LAC+VIVFTR RKR
Sbjct: 129 DSLLKPITRIILGVVIVTLLITFLLKDPPAWIKN-NISIGTFPPWVLACIVIVFTRARKR 187

Query: 163 TKDFLKRRGW 172
           T+DF K+ GW
Sbjct: 188 TRDFFKKYGW 197