Miyakogusa Predicted Gene

Lj0g3v0092629.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0092629.1 Non Chatacterized Hit- tr|I0YLZ5|I0YLZ5_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea C-,48.65,4e-19,no
description,Nucleotide-binding, alpha-beta plait; no description,Zinc
finger, CCHC-type; RRM,RNA ,CUFF.5082.1
         (181 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G23860.2 | Symbols: SRZ-21, SRZ21, RSZ21, At-RSZ21 | RS-conta...   162   2e-40
AT1G23860.1 | Symbols: SRZ-21, SRZ21, RSZP21, RSZ21, At-RSZ21 | ...   162   2e-40
AT1G23860.4 | Symbols: RSZP21, RSZ21, At-RSZ21 | RS-containing z...   162   2e-40
AT1G23860.3 | Symbols: SRZ-21, SRZ21, RSZ21, At-RSZ21 | RS-conta...   154   3e-38
AT4G31580.2 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22 | ...   152   9e-38
AT4G31580.1 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22 | ...   152   9e-38
AT2G24590.1 | Symbols: RSZ22a, At-RSZ22a | RNA recognition motif...   149   1e-36
AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-...    68   3e-12
AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-...    68   3e-12
AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-...    67   5e-12
AT4G02430.1 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RN...    62   2e-10
AT2G37340.1 | Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 | argin...    62   2e-10
AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RN...    62   3e-10
AT3G53500.2 | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding (RRM...    61   4e-10
AT1G09140.1 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE ...    55   2e-08
AT1G09140.2 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE ...    55   3e-08
AT1G60650.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    55   3e-08
AT1G60650.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    55   3e-08
AT3G49430.2 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich pr...    54   6e-08
AT3G10400.1 | Symbols:  | RNA recognition motif and CCHC-type zi...    54   6e-08
AT3G49430.3 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich pr...    54   7e-08
AT3G49430.1 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich pr...    54   7e-08

>AT1G23860.2 | Symbols: SRZ-21, SRZ21, RSZ21, At-RSZ21 |
           RS-containing zinc finger protein 21 |
           chr1:8428091-8429164 REVERSE LENGTH=187
          Length = 187

 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/192 (51%), Positives = 108/192 (56%), Gaps = 18/192 (9%)

Query: 1   MSRVYVGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDG 60
           M+RVYVGNLDPRV+ER+LEDEF+ +GVLR+VWVARRPPGYAFLEFDD+RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 61  KNGWRVELSHNSKXXXXXXXXXXXXXXEDLKCYECGEPGHFARECXXXXXXXXXXXXXXX 120
           KNGWRVELSH  K              ED KCYECGE GHFAREC               
Sbjct: 61  KNGWRVELSHKDK-GGRGGGGGRRGGIEDSKCYECGELGHFAREC-----RRGRGSVRRR 114

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITPPLRGRSNSRSPPYRHAR-------- 172
                                           +TPP RGRS SRSPPYR +R        
Sbjct: 115 SPSPRRRRSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSRRDSPRRRD 174

Query: 173 ----RVSPYANG 180
               R SPYANG
Sbjct: 175 SPYGRRSPYANG 186


>AT1G23860.1 | Symbols: SRZ-21, SRZ21, RSZP21, RSZ21, At-RSZ21 |
           RS-containing zinc finger protein 21 |
           chr1:8428091-8429164 REVERSE LENGTH=187
          Length = 187

 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/192 (51%), Positives = 108/192 (56%), Gaps = 18/192 (9%)

Query: 1   MSRVYVGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDG 60
           M+RVYVGNLDPRV+ER+LEDEF+ +GVLR+VWVARRPPGYAFLEFDD+RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 61  KNGWRVELSHNSKXXXXXXXXXXXXXXEDLKCYECGEPGHFARECXXXXXXXXXXXXXXX 120
           KNGWRVELSH  K              ED KCYECGE GHFAREC               
Sbjct: 61  KNGWRVELSHKDK-GGRGGGGGRRGGIEDSKCYECGELGHFAREC-----RRGRGSVRRR 114

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITPPLRGRSNSRSPPYRHAR-------- 172
                                           +TPP RGRS SRSPPYR +R        
Sbjct: 115 SPSPRRRRSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSRRDSPRRRD 174

Query: 173 ----RVSPYANG 180
               R SPYANG
Sbjct: 175 SPYGRRSPYANG 186


>AT1G23860.4 | Symbols: RSZP21, RSZ21, At-RSZ21 | RS-containing zinc
           finger protein 21 | chr1:8428091-8429164 REVERSE
           LENGTH=183
          Length = 183

 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/192 (51%), Positives = 108/192 (56%), Gaps = 22/192 (11%)

Query: 1   MSRVYVGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDG 60
           M+RVYVGNLDPRV+ER+LEDEF+ +GVLR+VWVARRPPGYAFLEFDD+RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 61  KNGWRVELSHNSKXXXXXXXXXXXXXXEDLKCYECGEPGHFARECXXXXXXXXXXXXXXX 120
           KNGWRVELSH  K              ED KCYECGE GHFAREC               
Sbjct: 61  KNGWRVELSHKDK-GGRGGGGGRRGGIEDSKCYECGELGHFAREC---------RRGRGS 110

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITPPLRGRSNSRSPPYRHAR-------- 172
                                           +TPP RGRS SRSPPYR +R        
Sbjct: 111 VRRRSPSPRRRRSPDYGSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSRRDSPRRRD 170

Query: 173 ----RVSPYANG 180
               R SPYANG
Sbjct: 171 SPYGRRSPYANG 182


>AT1G23860.3 | Symbols: SRZ-21, SRZ21, RSZ21, At-RSZ21 |
           RS-containing zinc finger protein 21 |
           chr1:8428091-8429164 REVERSE LENGTH=164
          Length = 164

 Score =  154 bits (389), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/105 (73%), Positives = 84/105 (80%), Gaps = 1/105 (0%)

Query: 1   MSRVYVGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDG 60
           M+RVYVGNLDPRV+ER+LEDEF+ +GVLR+VWVARRPPGYAFLEFDD+RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 61  KNGWRVELSHNSKXXXXXXXXXXXXXXEDLKCYECGEPGHFAREC 105
           KNGWRVELSH  K              ED KCYECGE GHFAREC
Sbjct: 61  KNGWRVELSHKDK-GGRGGGGGRRGGIEDSKCYECGELGHFAREC 104


>AT4G31580.2 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22 |
           serine/arginine-rich 22 | chr4:15306983-15308064 FORWARD
           LENGTH=200
          Length = 200

 Score =  152 bits (385), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 94/190 (49%), Positives = 101/190 (53%), Gaps = 9/190 (4%)

Query: 1   MSRVYVGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDG 60
           MSRVYVGNLDPRV+ER+LEDEFR +GV+RSVWVARRPPGYAFL+F+D RDA DAI ALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 61  KNGWRVELSHN---------SKXXXXXXXXXXXXXXEDLKCYECGEPGHFARECXXXXXX 111
           KNGWRVE SHN                          DLKCYECGE GHFAREC      
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNRGGT 120

Query: 112 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITPPLRGRSNSRSPPYRHA 171
                                                      PP RGRS SRSPP   A
Sbjct: 121 GRRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRSYSRSPPPYRA 180

Query: 172 RRVSPYANGD 181
           R   PYANG+
Sbjct: 181 REEVPYANGN 190


>AT4G31580.1 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22 |
           serine/arginine-rich 22 | chr4:15306983-15308064 FORWARD
           LENGTH=200
          Length = 200

 Score =  152 bits (385), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 94/190 (49%), Positives = 101/190 (53%), Gaps = 9/190 (4%)

Query: 1   MSRVYVGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDG 60
           MSRVYVGNLDPRV+ER+LEDEFR +GV+RSVWVARRPPGYAFL+F+D RDA DAI ALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 61  KNGWRVELSHN---------SKXXXXXXXXXXXXXXEDLKCYECGEPGHFARECXXXXXX 111
           KNGWRVE SHN                          DLKCYECGE GHFAREC      
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNRGGT 120

Query: 112 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITPPLRGRSNSRSPPYRHA 171
                                                      PP RGRS SRSPP   A
Sbjct: 121 GRRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRSYSRSPPPYRA 180

Query: 172 RRVSPYANGD 181
           R   PYANG+
Sbjct: 181 REEVPYANGN 190


>AT2G24590.1 | Symbols: RSZ22a, At-RSZ22a | RNA recognition motif
           and CCHC-type zinc finger domains containing protein |
           chr2:10449837-10450860 FORWARD LENGTH=196
          Length = 196

 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 81/111 (72%), Gaps = 6/111 (5%)

Query: 1   MSRVYVGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDG 60
           MSRVYVGNLDPRV+ER+LEDEFR +GV+RSVWVARRPPGYAFL+F+D RDA DAI  +DG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60

Query: 61  KNGWRVELSHN------SKXXXXXXXXXXXXXXEDLKCYECGEPGHFAREC 105
           KNGWRVE SHN                       DLKCYECGE GHFAREC
Sbjct: 61  KNGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFAREC 111


>AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
          RNA-binding (RRM/RBD/RNP motifs) family protein |
          chr1:626918-629583 FORWARD LENGTH=303
          Length = 303

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 6/76 (7%)

Query: 4  VYVGNLDPRVSERDLEDEFRLYG--VLRSVWVARRPPGYAFLEFDDKRDALDAIHALDGK 61
          VYVGNL   + ER++ED F  YG  V   + V  RPPGYAF+EFDD RDA DAIH  DG 
Sbjct: 9  VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68

Query: 62 N----GWRVELSHNSK 73
          +      RVEL+H  +
Sbjct: 69 DFDGHRLRVELAHGGR 84


>AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
          RNA-binding (RRM/RBD/RNP motifs) family protein |
          chr1:626918-629583 FORWARD LENGTH=303
          Length = 303

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 6/76 (7%)

Query: 4  VYVGNLDPRVSERDLEDEFRLYG--VLRSVWVARRPPGYAFLEFDDKRDALDAIHALDGK 61
          VYVGNL   + ER++ED F  YG  V   + V  RPPGYAF+EFDD RDA DAIH  DG 
Sbjct: 9  VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68

Query: 62 N----GWRVELSHNSK 73
          +      RVEL+H  +
Sbjct: 69 DFDGHRLRVELAHGGR 84


>AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
          RNA-binding (RRM/RBD/RNP motifs) family protein |
          chr1:626918-628995 FORWARD LENGTH=285
          Length = 285

 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 6/76 (7%)

Query: 4  VYVGNLDPRVSERDLEDEFRLYG--VLRSVWVARRPPGYAFLEFDDKRDALDAIHALDGK 61
          VYVGNL   + ER++ED F  YG  V   + V  RPPGYAF+EFDD RDA DAIH  DG 
Sbjct: 9  VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68

Query: 62 N----GWRVELSHNSK 73
          +      RVEL+H  +
Sbjct: 69 DFDGHRLRVELAHGGR 84


>AT4G02430.1 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
          motifs) family protein | chr4:1069186-1070543 FORWARD
          LENGTH=178
          Length = 178

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 6/76 (7%)

Query: 4  VYVGNLDPRVSERDLEDEFRLYG--VLRSVWVARRPPGYAFLEFDDKRDALDAIHALDGK 61
          +YVGNL   + ER++ED F  YG  V   + +  RPPGYAF+EF+D RDA DAI+  DG 
Sbjct: 9  IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68

Query: 62 N----GWRVELSHNSK 73
          +      RVEL+H  +
Sbjct: 69 DFDGHHLRVELAHGGR 84


>AT2G37340.1 | Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 |
           arginine/serine-rich zinc knuckle-containing protein 33
           | chr2:15670372-15672331 REVERSE LENGTH=290
          Length = 290

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 2   SRVYVGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDGK 61
           +R+YVG L  R   RDLE  F  YG +R V + R    YAF+EF D RDA DA H LDG+
Sbjct: 11  TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR---DYAFVEFGDPRDADDARHYLDGR 67

Query: 62  --NGWRVELSHNSKXXXXXXXXXXXXXXEDL-KCYECGEPGHFAREC 105
             +G R+ +  +                    +C+ CG  GH+AR+C
Sbjct: 68  DFDGSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDC 114


>AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
          motifs) family protein | chr4:1069186-1071313 FORWARD
          LENGTH=278
          Length = 278

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 6/76 (7%)

Query: 4  VYVGNLDPRVSERDLEDEFRLYG--VLRSVWVARRPPGYAFLEFDDKRDALDAIHALDGK 61
          +YVGNL   + ER++ED F  YG  V   + +  RPPGYAF+EF+D RDA DAI+  DG 
Sbjct: 9  IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68

Query: 62 N----GWRVELSHNSK 73
          +      RVEL+H  +
Sbjct: 69 DFDGHHLRVELAHGGR 84


>AT3G53500.2 | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding
           (RRM/RBD/RNP motifs) family protein with retrovirus zinc
           finger-like domain | chr3:19834557-19836507 REVERSE
           LENGTH=284
          Length = 284

 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 2   SRVYVGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDGK 61
           +R+YVG L  R   RDLE  F  YG +R V + R    YAF+EF D RDA DA + LDG+
Sbjct: 11  TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR---DYAFVEFSDPRDADDARYYLDGR 67

Query: 62  --NGWRVEL-SHNSKXXXXXXXXXXXXXXEDLKCYECGEPGHFAREC 105
             +G R+ + +                     +C+ CG  GH+AR+C
Sbjct: 68  DFDGSRITVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDC 114


>AT1G09140.1 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE
          PROTEIN 30 | chr1:2942887-2945818 REVERSE LENGTH=268
          Length = 268

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 6/76 (7%)

Query: 4  VYVGNLDPRVSERDLEDEFRLYGVLRSV--WVARRPPGYAFLEFDDKRDALDAIHALDGK 61
          +YVGNL   + + ++ED F  YG +  +   +  RPPGYAF+EF+D RDA DAI+  DG 
Sbjct: 9  IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68

Query: 62 NG----WRVELSHNSK 73
          +      RVE++H  +
Sbjct: 69 DFDGCRLRVEIAHGGR 84


>AT1G09140.2 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE
          PROTEIN 30 | chr1:2943528-2945818 REVERSE LENGTH=256
          Length = 256

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 6/76 (7%)

Query: 4  VYVGNLDPRVSERDLEDEFRLYGVLRSV--WVARRPPGYAFLEFDDKRDALDAIHALDGK 61
          +YVGNL   + + ++ED F  YG +  +   +  RPPGYAF+EF+D RDA DAI+  DG 
Sbjct: 9  IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68

Query: 62 NG----WRVELSHNSK 73
          +      RVE++H  +
Sbjct: 69 DFDGCRLRVEIAHGGR 84


>AT1G60650.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein with retrovirus zinc finger-like domain |
           chr1:22340089-22342148 FORWARD LENGTH=292
          Length = 292

 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 17/120 (14%)

Query: 2   SRVYVGNLDPRVSERDLEDEFRLYGVLR--SVWVAR---RPPGYAFLEFDDKRDALDAIH 56
           SR++VG L   V+ER LE  F  YG +    + V R   RP G+ F+ F D+R A DAI 
Sbjct: 12  SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71

Query: 57  ALDGKNGWRVELSHNS-----------KXXXXXXXXXXXXXXEDLKCYECGEPGHFAREC 105
            + G+      +S N            +              ED +C++C  PGH+AR+C
Sbjct: 72  HMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTED-ECFKCRRPGHWARDC 130


>AT1G60650.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein with retrovirus zinc finger-like domain |
           chr1:22340089-22342148 FORWARD LENGTH=292
          Length = 292

 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 17/120 (14%)

Query: 2   SRVYVGNLDPRVSERDLEDEFRLYGVLR--SVWVAR---RPPGYAFLEFDDKRDALDAIH 56
           SR++VG L   V+ER LE  F  YG +    + V R   RP G+ F+ F D+R A DAI 
Sbjct: 12  SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71

Query: 57  ALDGKNGWRVELSHNS-----------KXXXXXXXXXXXXXXEDLKCYECGEPGHFAREC 105
            + G+      +S N            +              ED +C++C  PGH+AR+C
Sbjct: 72  HMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTED-ECFKCRRPGHWARDC 130


>AT3G49430.2 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich
          protein 34A | chr3:18332668-18334617 FORWARD LENGTH=297
          Length = 297

 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 6/76 (7%)

Query: 4  VYVGNLDPRVSERDLEDEFRLYGVLRSV--WVARRPPGYAFLEFDDKRDALDAIHALDGK 61
          +YVGNL   + E ++ED F  YG +  +   V  RPP Y F+EF+  RDA DAI   DG 
Sbjct: 9  IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68

Query: 62 N----GWRVELSHNSK 73
          N      RVEL+H  +
Sbjct: 69 NLDGCRLRVELAHGGR 84


>AT3G10400.1 | Symbols:  | RNA recognition motif and CCHC-type zinc
           finger domains containing protein | chr3:3232636-3233421
           FORWARD LENGTH=261
          Length = 261

 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 7/111 (6%)

Query: 2   SRVYVGNLDPRVSERDLEDEFRLYGVLRSVWV-----ARRPPGYAFLEFDDKRDALDAIH 56
           S +YV NLD  ++  D+   F  +G +  V V      R+  G AF+ +  + DA  A  
Sbjct: 57  STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116

Query: 57  ALDGK--NGWRVELSHNSKXXXXXXXXXXXXXXEDLKCYECGEPGHFAREC 105
           ++D K  NG ++ +S  +               +  +CYECG+ GH + EC
Sbjct: 117 SMDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGDEGHLSYEC 167


>AT3G49430.3 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich
          protein 34A | chr3:18332668-18334829 FORWARD LENGTH=300
          Length = 300

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 6/76 (7%)

Query: 4  VYVGNLDPRVSERDLEDEFRLYGVLRSV--WVARRPPGYAFLEFDDKRDALDAIHALDGK 61
          +YVGNL   + E ++ED F  YG +  +   V  RPP Y F+EF+  RDA DAI   DG 
Sbjct: 9  IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68

Query: 62 N----GWRVELSHNSK 73
          N      RVEL+H  +
Sbjct: 69 NLDGCRLRVELAHGGR 84


>AT3G49430.1 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich
          protein 34A | chr3:18332668-18334829 FORWARD LENGTH=300
          Length = 300

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 6/76 (7%)

Query: 4  VYVGNLDPRVSERDLEDEFRLYGVLRSV--WVARRPPGYAFLEFDDKRDALDAIHALDGK 61
          +YVGNL   + E ++ED F  YG +  +   V  RPP Y F+EF+  RDA DAI   DG 
Sbjct: 9  IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68

Query: 62 N----GWRVELSHNSK 73
          N      RVEL+H  +
Sbjct: 69 NLDGCRLRVELAHGGR 84