Miyakogusa Predicted Gene
- Lj0g3v0092629.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0092629.1 Non Chatacterized Hit- tr|I0YLZ5|I0YLZ5_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea C-,48.65,4e-19,no
description,Nucleotide-binding, alpha-beta plait; no description,Zinc
finger, CCHC-type; RRM,RNA ,CUFF.5082.1
(181 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G23860.2 | Symbols: SRZ-21, SRZ21, RSZ21, At-RSZ21 | RS-conta... 162 2e-40
AT1G23860.1 | Symbols: SRZ-21, SRZ21, RSZP21, RSZ21, At-RSZ21 | ... 162 2e-40
AT1G23860.4 | Symbols: RSZP21, RSZ21, At-RSZ21 | RS-containing z... 162 2e-40
AT1G23860.3 | Symbols: SRZ-21, SRZ21, RSZ21, At-RSZ21 | RS-conta... 154 3e-38
AT4G31580.2 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22 | ... 152 9e-38
AT4G31580.1 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22 | ... 152 9e-38
AT2G24590.1 | Symbols: RSZ22a, At-RSZ22a | RNA recognition motif... 149 1e-36
AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 68 3e-12
AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 68 3e-12
AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 67 5e-12
AT4G02430.1 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RN... 62 2e-10
AT2G37340.1 | Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 | argin... 62 2e-10
AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RN... 62 3e-10
AT3G53500.2 | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding (RRM... 61 4e-10
AT1G09140.1 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE ... 55 2e-08
AT1G09140.2 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE ... 55 3e-08
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 3e-08
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 3e-08
AT3G49430.2 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich pr... 54 6e-08
AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zi... 54 6e-08
AT3G49430.3 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich pr... 54 7e-08
AT3G49430.1 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich pr... 54 7e-08
>AT1G23860.2 | Symbols: SRZ-21, SRZ21, RSZ21, At-RSZ21 |
RS-containing zinc finger protein 21 |
chr1:8428091-8429164 REVERSE LENGTH=187
Length = 187
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/192 (51%), Positives = 108/192 (56%), Gaps = 18/192 (9%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDG 60
M+RVYVGNLDPRV+ER+LEDEF+ +GVLR+VWVARRPPGYAFLEFDD+RDALDAI ALD
Sbjct: 1 MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60
Query: 61 KNGWRVELSHNSKXXXXXXXXXXXXXXEDLKCYECGEPGHFARECXXXXXXXXXXXXXXX 120
KNGWRVELSH K ED KCYECGE GHFAREC
Sbjct: 61 KNGWRVELSHKDK-GGRGGGGGRRGGIEDSKCYECGELGHFAREC-----RRGRGSVRRR 114
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITPPLRGRSNSRSPPYRHAR-------- 172
+TPP RGRS SRSPPYR +R
Sbjct: 115 SPSPRRRRSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSRRDSPRRRD 174
Query: 173 ----RVSPYANG 180
R SPYANG
Sbjct: 175 SPYGRRSPYANG 186
>AT1G23860.1 | Symbols: SRZ-21, SRZ21, RSZP21, RSZ21, At-RSZ21 |
RS-containing zinc finger protein 21 |
chr1:8428091-8429164 REVERSE LENGTH=187
Length = 187
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/192 (51%), Positives = 108/192 (56%), Gaps = 18/192 (9%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDG 60
M+RVYVGNLDPRV+ER+LEDEF+ +GVLR+VWVARRPPGYAFLEFDD+RDALDAI ALD
Sbjct: 1 MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60
Query: 61 KNGWRVELSHNSKXXXXXXXXXXXXXXEDLKCYECGEPGHFARECXXXXXXXXXXXXXXX 120
KNGWRVELSH K ED KCYECGE GHFAREC
Sbjct: 61 KNGWRVELSHKDK-GGRGGGGGRRGGIEDSKCYECGELGHFAREC-----RRGRGSVRRR 114
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITPPLRGRSNSRSPPYRHAR-------- 172
+TPP RGRS SRSPPYR +R
Sbjct: 115 SPSPRRRRSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSRRDSPRRRD 174
Query: 173 ----RVSPYANG 180
R SPYANG
Sbjct: 175 SPYGRRSPYANG 186
>AT1G23860.4 | Symbols: RSZP21, RSZ21, At-RSZ21 | RS-containing zinc
finger protein 21 | chr1:8428091-8429164 REVERSE
LENGTH=183
Length = 183
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/192 (51%), Positives = 108/192 (56%), Gaps = 22/192 (11%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDG 60
M+RVYVGNLDPRV+ER+LEDEF+ +GVLR+VWVARRPPGYAFLEFDD+RDALDAI ALD
Sbjct: 1 MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60
Query: 61 KNGWRVELSHNSKXXXXXXXXXXXXXXEDLKCYECGEPGHFARECXXXXXXXXXXXXXXX 120
KNGWRVELSH K ED KCYECGE GHFAREC
Sbjct: 61 KNGWRVELSHKDK-GGRGGGGGRRGGIEDSKCYECGELGHFAREC---------RRGRGS 110
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITPPLRGRSNSRSPPYRHAR-------- 172
+TPP RGRS SRSPPYR +R
Sbjct: 111 VRRRSPSPRRRRSPDYGSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSRRDSPRRRD 170
Query: 173 ----RVSPYANG 180
R SPYANG
Sbjct: 171 SPYGRRSPYANG 182
>AT1G23860.3 | Symbols: SRZ-21, SRZ21, RSZ21, At-RSZ21 |
RS-containing zinc finger protein 21 |
chr1:8428091-8429164 REVERSE LENGTH=164
Length = 164
Score = 154 bits (389), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 84/105 (80%), Gaps = 1/105 (0%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDG 60
M+RVYVGNLDPRV+ER+LEDEF+ +GVLR+VWVARRPPGYAFLEFDD+RDALDAI ALD
Sbjct: 1 MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60
Query: 61 KNGWRVELSHNSKXXXXXXXXXXXXXXEDLKCYECGEPGHFAREC 105
KNGWRVELSH K ED KCYECGE GHFAREC
Sbjct: 61 KNGWRVELSHKDK-GGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
>AT4G31580.2 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22 |
serine/arginine-rich 22 | chr4:15306983-15308064 FORWARD
LENGTH=200
Length = 200
Score = 152 bits (385), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 94/190 (49%), Positives = 101/190 (53%), Gaps = 9/190 (4%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDG 60
MSRVYVGNLDPRV+ER+LEDEFR +GV+RSVWVARRPPGYAFL+F+D RDA DAI ALDG
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
Query: 61 KNGWRVELSHN---------SKXXXXXXXXXXXXXXEDLKCYECGEPGHFARECXXXXXX 111
KNGWRVE SHN DLKCYECGE GHFAREC
Sbjct: 61 KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNRGGT 120
Query: 112 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITPPLRGRSNSRSPPYRHA 171
PP RGRS SRSPP A
Sbjct: 121 GRRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRSYSRSPPPYRA 180
Query: 172 RRVSPYANGD 181
R PYANG+
Sbjct: 181 REEVPYANGN 190
>AT4G31580.1 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22 |
serine/arginine-rich 22 | chr4:15306983-15308064 FORWARD
LENGTH=200
Length = 200
Score = 152 bits (385), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 94/190 (49%), Positives = 101/190 (53%), Gaps = 9/190 (4%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDG 60
MSRVYVGNLDPRV+ER+LEDEFR +GV+RSVWVARRPPGYAFL+F+D RDA DAI ALDG
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
Query: 61 KNGWRVELSHN---------SKXXXXXXXXXXXXXXEDLKCYECGEPGHFARECXXXXXX 111
KNGWRVE SHN DLKCYECGE GHFAREC
Sbjct: 61 KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNRGGT 120
Query: 112 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITPPLRGRSNSRSPPYRHA 171
PP RGRS SRSPP A
Sbjct: 121 GRRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRSYSRSPPPYRA 180
Query: 172 RRVSPYANGD 181
R PYANG+
Sbjct: 181 REEVPYANGN 190
>AT2G24590.1 | Symbols: RSZ22a, At-RSZ22a | RNA recognition motif
and CCHC-type zinc finger domains containing protein |
chr2:10449837-10450860 FORWARD LENGTH=196
Length = 196
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 81/111 (72%), Gaps = 6/111 (5%)
Query: 1 MSRVYVGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDG 60
MSRVYVGNLDPRV+ER+LEDEFR +GV+RSVWVARRPPGYAFL+F+D RDA DAI +DG
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60
Query: 61 KNGWRVELSHN------SKXXXXXXXXXXXXXXEDLKCYECGEPGHFAREC 105
KNGWRVE SHN DLKCYECGE GHFAREC
Sbjct: 61 KNGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFAREC 111
>AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-629583 FORWARD LENGTH=303
Length = 303
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 6/76 (7%)
Query: 4 VYVGNLDPRVSERDLEDEFRLYG--VLRSVWVARRPPGYAFLEFDDKRDALDAIHALDGK 61
VYVGNL + ER++ED F YG V + V RPPGYAF+EFDD RDA DAIH DG
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 62 N----GWRVELSHNSK 73
+ RVEL+H +
Sbjct: 69 DFDGHRLRVELAHGGR 84
>AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-629583 FORWARD LENGTH=303
Length = 303
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 6/76 (7%)
Query: 4 VYVGNLDPRVSERDLEDEFRLYG--VLRSVWVARRPPGYAFLEFDDKRDALDAIHALDGK 61
VYVGNL + ER++ED F YG V + V RPPGYAF+EFDD RDA DAIH DG
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 62 N----GWRVELSHNSK 73
+ RVEL+H +
Sbjct: 69 DFDGHRLRVELAHGGR 84
>AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-628995 FORWARD LENGTH=285
Length = 285
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 6/76 (7%)
Query: 4 VYVGNLDPRVSERDLEDEFRLYG--VLRSVWVARRPPGYAFLEFDDKRDALDAIHALDGK 61
VYVGNL + ER++ED F YG V + V RPPGYAF+EFDD RDA DAIH DG
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 62 N----GWRVELSHNSK 73
+ RVEL+H +
Sbjct: 69 DFDGHRLRVELAHGGR 84
>AT4G02430.1 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr4:1069186-1070543 FORWARD
LENGTH=178
Length = 178
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 6/76 (7%)
Query: 4 VYVGNLDPRVSERDLEDEFRLYG--VLRSVWVARRPPGYAFLEFDDKRDALDAIHALDGK 61
+YVGNL + ER++ED F YG V + + RPPGYAF+EF+D RDA DAI+ DG
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 62 N----GWRVELSHNSK 73
+ RVEL+H +
Sbjct: 69 DFDGHHLRVELAHGGR 84
>AT2G37340.1 | Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 |
arginine/serine-rich zinc knuckle-containing protein 33
| chr2:15670372-15672331 REVERSE LENGTH=290
Length = 290
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDGK 61
+R+YVG L R RDLE F YG +R V + R YAF+EF D RDA DA H LDG+
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR---DYAFVEFGDPRDADDARHYLDGR 67
Query: 62 --NGWRVELSHNSKXXXXXXXXXXXXXXEDL-KCYECGEPGHFAREC 105
+G R+ + + +C+ CG GH+AR+C
Sbjct: 68 DFDGSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDC 114
>AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr4:1069186-1071313 FORWARD
LENGTH=278
Length = 278
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 6/76 (7%)
Query: 4 VYVGNLDPRVSERDLEDEFRLYG--VLRSVWVARRPPGYAFLEFDDKRDALDAIHALDGK 61
+YVGNL + ER++ED F YG V + + RPPGYAF+EF+D RDA DAI+ DG
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 62 N----GWRVELSHNSK 73
+ RVEL+H +
Sbjct: 69 DFDGHHLRVELAHGGR 84
>AT3G53500.2 | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding
(RRM/RBD/RNP motifs) family protein with retrovirus zinc
finger-like domain | chr3:19834557-19836507 REVERSE
LENGTH=284
Length = 284
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDGK 61
+R+YVG L R RDLE F YG +R V + R YAF+EF D RDA DA + LDG+
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR---DYAFVEFSDPRDADDARYYLDGR 67
Query: 62 --NGWRVEL-SHNSKXXXXXXXXXXXXXXEDLKCYECGEPGHFAREC 105
+G R+ + + +C+ CG GH+AR+C
Sbjct: 68 DFDGSRITVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDC 114
>AT1G09140.1 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE
PROTEIN 30 | chr1:2942887-2945818 REVERSE LENGTH=268
Length = 268
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 6/76 (7%)
Query: 4 VYVGNLDPRVSERDLEDEFRLYGVLRSV--WVARRPPGYAFLEFDDKRDALDAIHALDGK 61
+YVGNL + + ++ED F YG + + + RPPGYAF+EF+D RDA DAI+ DG
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 62 NG----WRVELSHNSK 73
+ RVE++H +
Sbjct: 69 DFDGCRLRVEIAHGGR 84
>AT1G09140.2 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE
PROTEIN 30 | chr1:2943528-2945818 REVERSE LENGTH=256
Length = 256
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 6/76 (7%)
Query: 4 VYVGNLDPRVSERDLEDEFRLYGVLRSV--WVARRPPGYAFLEFDDKRDALDAIHALDGK 61
+YVGNL + + ++ED F YG + + + RPPGYAF+EF+D RDA DAI+ DG
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 62 NG----WRVELSHNSK 73
+ RVE++H +
Sbjct: 69 DFDGCRLRVEIAHGGR 84
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 17/120 (14%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRLYGVLR--SVWVAR---RPPGYAFLEFDDKRDALDAIH 56
SR++VG L V+ER LE F YG + + V R RP G+ F+ F D+R A DAI
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 57 ALDGKNGWRVELSHNS-----------KXXXXXXXXXXXXXXEDLKCYECGEPGHFAREC 105
+ G+ +S N + ED +C++C PGH+AR+C
Sbjct: 72 HMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTED-ECFKCRRPGHWARDC 130
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 17/120 (14%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRLYGVLR--SVWVAR---RPPGYAFLEFDDKRDALDAIH 56
SR++VG L V+ER LE F YG + + V R RP G+ F+ F D+R A DAI
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 57 ALDGKNGWRVELSHNS-----------KXXXXXXXXXXXXXXEDLKCYECGEPGHFAREC 105
+ G+ +S N + ED +C++C PGH+AR+C
Sbjct: 72 HMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTED-ECFKCRRPGHWARDC 130
>AT3G49430.2 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich
protein 34A | chr3:18332668-18334617 FORWARD LENGTH=297
Length = 297
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 4 VYVGNLDPRVSERDLEDEFRLYGVLRSV--WVARRPPGYAFLEFDDKRDALDAIHALDGK 61
+YVGNL + E ++ED F YG + + V RPP Y F+EF+ RDA DAI DG
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 62 N----GWRVELSHNSK 73
N RVEL+H +
Sbjct: 69 NLDGCRLRVELAHGGR 84
>AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zinc
finger domains containing protein | chr3:3232636-3233421
FORWARD LENGTH=261
Length = 261
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 2 SRVYVGNLDPRVSERDLEDEFRLYGVLRSVWV-----ARRPPGYAFLEFDDKRDALDAIH 56
S +YV NLD ++ D+ F +G + V V R+ G AF+ + + DA A
Sbjct: 57 STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116
Query: 57 ALDGK--NGWRVELSHNSKXXXXXXXXXXXXXXEDLKCYECGEPGHFAREC 105
++D K NG ++ +S + + +CYECG+ GH + EC
Sbjct: 117 SMDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGDEGHLSYEC 167
>AT3G49430.3 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich
protein 34A | chr3:18332668-18334829 FORWARD LENGTH=300
Length = 300
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 4 VYVGNLDPRVSERDLEDEFRLYGVLRSV--WVARRPPGYAFLEFDDKRDALDAIHALDGK 61
+YVGNL + E ++ED F YG + + V RPP Y F+EF+ RDA DAI DG
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 62 N----GWRVELSHNSK 73
N RVEL+H +
Sbjct: 69 NLDGCRLRVELAHGGR 84
>AT3G49430.1 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich
protein 34A | chr3:18332668-18334829 FORWARD LENGTH=300
Length = 300
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 4 VYVGNLDPRVSERDLEDEFRLYGVLRSV--WVARRPPGYAFLEFDDKRDALDAIHALDGK 61
+YVGNL + E ++ED F YG + + V RPP Y F+EF+ RDA DAI DG
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 62 N----GWRVELSHNSK 73
N RVEL+H +
Sbjct: 69 NLDGCRLRVELAHGGR 84