Miyakogusa Predicted Gene

Lj0g3v0091599.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0091599.1 Non Chatacterized Hit- tr|I1MPT8|I1MPT8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.13099
PE,89.43,0,RIBOSOMALL6,Ribosomal protein L6, bacterial-type; SUBFAMILY
NOT NAMED,NULL; 60S/50S RIBOSOMAL PROTEI,CUFF.5000.1
         (227 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05190.1 | Symbols: emb2394 | Ribosomal protein L6 family | c...   367   e-102
AT2G18400.1 | Symbols:  | ribosomal protein L6 family protein | ...    89   2e-18

>AT1G05190.1 | Symbols: emb2394 | Ribosomal protein L6 family |
           chr1:1502515-1503738 REVERSE LENGTH=223
          Length = 223

 Score =  367 bits (943), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/227 (80%), Positives = 202/227 (88%), Gaps = 4/227 (1%)

Query: 1   MASTVTSSFQISNLKSGFLGERNKFRGSSVPSAAHVGFSRKTTECKESRIGKQPVDVPSN 60
           MAS++ SSFQ    +S FLG+RN F+ SS P  A VG+S KT ECKESRIGKQP+ VPSN
Sbjct: 1   MASSLVSSFQP---RSAFLGDRNVFKVSSTP-FAQVGYSSKTIECKESRIGKQPIAVPSN 56

Query: 61  VTIKLEGQDIAVKGPLGELALSYPREVLVEREESGALRVKKAVETRRANQMHGLFRTLTD 120
           VTI LEGQD+ VKGPLGELAL+YPREV + +EESG LRVKK VETRRANQMHGLFRTLTD
Sbjct: 57  VTIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTD 116

Query: 121 NLVVGVSKGFEKKLQLVGVGYRATVEGNDVVLNLGFSHPVRMTIPDGLKVKVEENTRITV 180
           N+VVGVSKGFEKKL LVGVGYRATV+G ++VLNLGFSHPV+M IPD LKVKVEENTRITV
Sbjct: 117 NMVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITV 176

Query: 181 SGYDKSEIGQFAASIRRWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 227
           SGYDKSEIGQFAA++R+WRPPEPYKGKGVKY+DEIVRRKEGKAGKKK
Sbjct: 177 SGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223


>AT2G18400.1 | Symbols:  | ribosomal protein L6 family protein |
           chr2:7989665-7989973 REVERSE LENGTH=102
          Length = 102

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 59/89 (66%), Gaps = 2/89 (2%)

Query: 130 FEKKLQLVGVGYRATVE--GNDVVLNLGFSHPVRMTIPDGLKVKVEENTRITVSGYDKSE 187
           F + L++VGVGY+A  E  G  + L LG+SH V + +P  ++V   +N  +  +G DK  
Sbjct: 5   FFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGIDKQR 64

Query: 188 IGQFAASIRRWRPPEPYKGKGVKYADEIV 216
           + QFAA++R  +PPEPYKGKG+ Y DE+V
Sbjct: 65  VHQFAATVRSCKPPEPYKGKGIMYTDEVV 93