Miyakogusa Predicted Gene

Lj0g3v0091569.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0091569.1 Non Chatacterized Hit- tr|D7L0H8|D7L0H8_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,56.36,3e-19,GLIOMA TUMOR SUPPRESSOR CANDIDATE REGION GENE
1,NULL; coiled-coil,NULL; seg,NULL,CUFF.4990.1
         (183 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G03460.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    75   2e-14
AT5G17510.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    72   2e-13

>AT3G03460.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G17510.1); Has 19732 Blast hits to 8747
           proteins in 456 species: Archae - 0; Bacteria - 449;
           Metazoa - 7438; Fungi - 2099; Plants - 1550; Viruses -
           53; Other Eukaryotes - 8143 (source: NCBI BLink). |
           chr3:823069-824485 REVERSE LENGTH=354
          Length = 354

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 39/46 (84%)

Query: 116 KMVRPGNPMELQMAYQDAWRVCHPDFKRPFSSLEDACESFSHYNLL 161
           K++RP N +E+Q AYQDAWRVCHPDFKRPF+SLEDACE    Y+++
Sbjct: 113 KLMRPSNQLEIQFAYQDAWRVCHPDFKRPFASLEDACERLLPYHVV 158


>AT5G17510.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G03460.1); Has 1807 Blast hits to 1807 proteins
           in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:5770518-5772343
           REVERSE LENGTH=369
          Length = 369

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 116 KMVRPGNPMELQMAYQDAWRVCHPDFKRPFSSLEDACESFSHYNLLLMSDLLCSGRIL 173
           K++RP N +ELQ AYQDAWRVCHP+FK+PFSSLEDACE    Y+++   +     RIL
Sbjct: 122 KLMRPLNHIELQCAYQDAWRVCHPNFKQPFSSLEDACERLLPYHVVADYEAEEDDRIL 179