Miyakogusa Predicted Gene

Lj0g3v0091139.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0091139.1 Non Chatacterized Hit- tr|I3S326|I3S326_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.96,0,seg,NULL;
RIBOSOMAL_L27,Ribosomal protein L27, conserved site; Ribosomal L27
protein,Ribosomal prote,CUFF.4962.1
         (192 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40950.1 | Symbols: RPL27 | ribosomal protein large subunit 2...   202   1e-52
AT5G15220.1 | Symbols:  | Ribosomal protein L27 family protein |...    92   2e-19
AT2G16930.3 | Symbols:  | Ribosomal protein L27 family protein |...    91   3e-19
AT2G16930.1 | Symbols:  | Ribosomal protein L27 family protein |...    91   3e-19
AT2G16930.2 | Symbols:  | Ribosomal protein L27 family protein |...    91   3e-19

>AT5G40950.1 | Symbols: RPL27 | ribosomal protein large subunit 27 |
           chr5:16410866-16411845 FORWARD LENGTH=198
          Length = 198

 Score =  202 bits (514), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 104/146 (71%), Positives = 114/146 (78%), Gaps = 4/146 (2%)

Query: 51  PLTIQNAHKKGAGSTKNGRDSESKRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGK 110
           PLTI++AHKKGAGSTKNGRDS  +RLGVKIYGDQVAKPG+IIVRQRGTKFHAGKNVG+GK
Sbjct: 53  PLTIESAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGK 112

Query: 111 DYTIFSLIDGVVKFEKYGPDRKKISVYPREIPVENPNSYRARKREYFXXXXXXXXXXXXX 170
           D+TIFSLIDG+VKFEK+GPDRKKISVYPREI  ENPNSYRARKRE F             
Sbjct: 113 DHTIFSLIDGLVKFEKFGPDRKKISVYPREIVPENPNSYRARKRENFRLQREKKKARREN 172

Query: 171 ---XILRSQLVLASTD-DAAITNPMC 192
               +   +LVLAS   D A  NP C
Sbjct: 173 YSYTLPTPELVLASASVDDAEANPEC 198


>AT5G15220.1 | Symbols:  | Ribosomal protein L27 family protein |
           chr5:4941466-4942133 REVERSE LENGTH=154
          Length = 154

 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/91 (57%), Positives = 63/91 (69%), Gaps = 1/91 (1%)

Query: 57  AHKKGAGSTKNGRDSESKRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDYTIFS 116
           A KK AGSTKNGRDS  K LGVK +G +   PG+IIVRQRGT+FH G  VG+GKD+T+F+
Sbjct: 47  ATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 106

Query: 117 LIDGVVKFEKYG-PDRKKISVYPREIPVENP 146
           L +G V+FEK     RK I V P    V +P
Sbjct: 107 LKEGRVRFEKSKITGRKWIHVDPTGGHVLHP 137


>AT2G16930.3 | Symbols:  | Ribosomal protein L27 family protein |
           chr2:7341492-7342118 FORWARD LENGTH=154
          Length = 154

 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 60/83 (72%), Gaps = 1/83 (1%)

Query: 57  AHKKGAGSTKNGRDSESKRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDYTIFS 116
           A KK AGSTKNGRDS  K LGVK +G +   PG+IIVRQRGT+FH G  VG+GKD+T+F+
Sbjct: 47  ATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 106

Query: 117 LIDGVVKFEKYG-PDRKKISVYP 138
           L +G V+FEK     RK I V P
Sbjct: 107 LKEGRVRFEKSKITGRKWIHVDP 129


>AT2G16930.1 | Symbols:  | Ribosomal protein L27 family protein |
           chr2:7341492-7342118 FORWARD LENGTH=154
          Length = 154

 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 60/83 (72%), Gaps = 1/83 (1%)

Query: 57  AHKKGAGSTKNGRDSESKRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDYTIFS 116
           A KK AGSTKNGRDS  K LGVK +G +   PG+IIVRQRGT+FH G  VG+GKD+T+F+
Sbjct: 47  ATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 106

Query: 117 LIDGVVKFEKYG-PDRKKISVYP 138
           L +G V+FEK     RK I V P
Sbjct: 107 LKEGRVRFEKSKITGRKWIHVDP 129


>AT2G16930.2 | Symbols:  | Ribosomal protein L27 family protein |
           chr2:7341492-7342118 FORWARD LENGTH=154
          Length = 154

 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 60/83 (72%), Gaps = 1/83 (1%)

Query: 57  AHKKGAGSTKNGRDSESKRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDYTIFS 116
           A KK AGSTKNGRDS  K LGVK +G +   PG+IIVRQRGT+FH G  VG+GKD+T+F+
Sbjct: 47  ATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 106

Query: 117 LIDGVVKFEKYG-PDRKKISVYP 138
           L +G V+FEK     RK I V P
Sbjct: 107 LKEGRVRFEKSKITGRKWIHVDP 129