Miyakogusa Predicted Gene

Lj0g3v0091109.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0091109.1 Non Chatacterized Hit- tr|I3S419|I3S419_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.78,0,seg,NULL;
NAC_AB,Nascent polypeptide-associated complex NAC; NAC,Nascent
polypeptide-associated comp,CUFF.5124.1
         (164 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G17880.1 | Symbols: BTF3, ATBTF3 | basic transcription factor...   209   5e-55
AT1G73230.1 | Symbols:  | Nascent polypeptide-associated complex...   201   2e-52

>AT1G17880.1 | Symbols: BTF3, ATBTF3 | basic transcription factor 3
           | chr1:6152572-6153425 REVERSE LENGTH=165
          Length = 165

 Score =  209 bits (533), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 108/140 (77%), Positives = 114/140 (81%), Gaps = 4/140 (2%)

Query: 1   MKMAGSVXXXXXXXXXXXXXAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVI 60
           MKMA +V             AVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIFKDDVVI
Sbjct: 7   MKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIFKDDVVI 66

Query: 61  QFLNPKVQASIAANTWVVSGSPQTKKLQDILPSIIQQLGPDNLENLKKLAEQFQKQAPEA 120
           QF+NPKVQASIAANTWVVSGSPQTKKLQDILP II QLGPDN++NLKKLAEQFQKQA   
Sbjct: 67  QFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQKQASGE 126

Query: 121 G----ATAQEEDDDAVPDLV 136
           G    AT QEEDDD VP+LV
Sbjct: 127 GNAASATIQEEDDDDVPELV 146


>AT1G73230.1 | Symbols:  | Nascent polypeptide-associated complex
           NAC | chr1:27540506-27541364 REVERSE LENGTH=165
          Length = 165

 Score =  201 bits (511), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/130 (79%), Positives = 109/130 (83%), Gaps = 3/130 (2%)

Query: 1   MKMAGSVXXXXXXXXXXXXXAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVI 60
           MKMA +V             AVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIFKDDVVI
Sbjct: 7   MKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIFKDDVVI 66

Query: 61  QFLNPKVQASIAANTWVVSGSPQTKKLQDILPSIIQQLGPDNLENLKKLAEQFQKQAPEA 120
           QF+NPKVQASIAANTWVVSG+PQTKKLQDILP II QLGPDNL+NLKKLAEQFQKQAP A
Sbjct: 67  QFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQKQAPGA 126

Query: 121 G---ATAQEE 127
           G   AT QEE
Sbjct: 127 GDVPATIQEE 136