Miyakogusa Predicted Gene

Lj0g3v0091079.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0091079.1 tr|B9I3U2|B9I3U2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_570288 PE=4
SV=1,61.82,0.000000000003,F-box,F-box domain, cyclin-like; A Receptor
for Ubiquitination Targets,F-box domain, cyclin-like; se,CUFF.4947.1
         (219 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G63520.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: F-box doma...   165   2e-41

>AT5G63520.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: F-box domain,
           Skp2-like (InterPro:IPR022364), FIST C domain
           (InterPro:IPR019494), FIST domain, N-terminal
           (InterPro:IPR013702); Has 137 Blast hits to 137 proteins
           in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6;
           Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes -
           11 (source: NCBI BLink). | chr5:25426300-25429093
           REVERSE LENGTH=519
          Length = 519

 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/206 (46%), Positives = 128/206 (62%), Gaps = 7/206 (3%)

Query: 16  KSITKGKASTD--SIMGVGLLNDDLLQNILTRLPALSFASAACVSKTWNSVSNRILSRPK 73
           KS    K  TD   ++ +  +N+DLL NIL RLPA SFA A+CV++ W+SV NRILSRPK
Sbjct: 6   KSENSKKMKTDMADMVPIAAMNEDLLHNILLRLPAKSFAFASCVNRFWSSVCNRILSRPK 65

Query: 74  LSSALSLNPSLTDAVNEVLHKVLAEPIRPYFAIVNVGSGFESSKILRLVRKRLGFNIPVI 133
           + SA S NP    A  EVL KVL+EPIRP F I N+  G    + L L+ +R+G  +P+I
Sbjct: 66  MISAFSRNPDQLRAGEEVLDKVLSEPIRPQFVIANITCG-NMEETLTLITERVGSRVPII 124

Query: 134 VSVTNGIMGRDALTDEFKEVKWGALFSGIDSEAYARNLNEGIVLTVGYLPGLKVEAIPLR 193
           VSV  GI+G++A  D+  EV+   L S  D E +    N  I+LT+GYLPG+KV+ IP+ 
Sbjct: 125 VSVVTGILGKEACNDKAGEVR---LHSTSDDELFDV-ANFAILLTIGYLPGMKVDIIPVI 180

Query: 194 RPPKTPQEPWIDNFVMDIKEYSASVS 219
           +          D FVMDI+ Y + VS
Sbjct: 181 QAKGESGAEMEDKFVMDIRNYMSMVS 206