Miyakogusa Predicted Gene

Lj0g3v0090789.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0090789.1 tr|G7I9H7|G7I9H7_MEDTR Lon protease homolog
OS=Medicago truncatula GN=MTR_1g084020 PE=3 SV=1,78.95,0.0000000002,no
description,NULL; UNCHARACTERIZED PROTEIN YTBQ,NULL; NAD DEPENDENT
EPIMERASE/DEHYDRATASE,NULL; se,CUFF.4923.1
         (165 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51160.1 | Symbols: MUR1, MUR_1, GMD2 | NAD(P)-binding Rossma...    64   6e-11
AT5G66280.1 | Symbols: GMD1 | GDP-D-mannose 4,6-dehydratase 1 | ...    62   1e-10

>AT3G51160.1 | Symbols: MUR1, MUR_1, GMD2 | NAD(P)-binding
           Rossmann-fold superfamily protein |
           chr3:19007232-19008353 REVERSE LENGTH=373
          Length = 373

 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 19/74 (25%)

Query: 20  CNGI---------------RKITRAVGRLKIGLQSKLVLGNLQASRDWGLAGVCRAVVVK 64
           CNGI               RKITRA+GR+K+GLQ+KL LGNLQASRDWG AG      V+
Sbjct: 208 CNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDY----VE 263

Query: 65  VQSLLLNLLRPSRF 78
              L+L   +P  +
Sbjct: 264 AMWLMLQQEKPDDY 277


>AT5G66280.1 | Symbols: GMD1 | GDP-D-mannose 4,6-dehydratase 1 |
           chr5:26476434-26477519 FORWARD LENGTH=361
          Length = 361

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 19/74 (25%)

Query: 20  CNGI---------------RKITRAVGRLKIGLQSKLVLGNLQASRDWGLAGVCRAVVVK 64
           CNGI               RKITRA+GR+K+GLQ+KL LGN+QASRDWG AG      V+
Sbjct: 196 CNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNIQASRDWGFAG----DYVE 251

Query: 65  VQSLLLNLLRPSRF 78
              L+L   +P  +
Sbjct: 252 AMWLMLQQEKPDDY 265