Miyakogusa Predicted Gene

Lj0g3v0090639.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0090639.1 Non Chatacterized Hit- tr|F6GYE7|F6GYE7_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,40.33,3e-19,seg,NULL,CUFF.4910.1
         (172 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58130.1 | Symbols: ROS3 | RNA-binding (RRM/RBD/RNP motifs) f...    58   4e-09

>AT5G58130.1 | Symbols: ROS3 | RNA-binding (RRM/RBD/RNP motifs)
           family protein | chr5:23521190-23523766 REVERSE
           LENGTH=748
          Length = 748

 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 41/155 (26%)

Query: 26  APNNTGRGASWLRKQSWTQLVSPSN-NSFSISQILPDITFPEPIFKEPVVDPANSDDCKH 84
           A N +  G+SWL+K SWTQLVS  N +SFSI+Q+ PD+T               SD  + 
Sbjct: 591 ASNKSTGGSSWLQKASWTQLVSDKNTSSFSITQLFPDLT---------------SDKGEA 635

Query: 85  GGVNMDTTNEAFNGEIIPEKSQHTDASDTAAPVV--------------EQKTETSPGDDD 130
            GV  +  N+  N        + TD + ++   V              ++  +   G + 
Sbjct: 636 AGVINNVGNQFSNSNQTASAMKQTDYASSSGGFVAAGVPVDSTPVRSLDENRQRLNGKNV 695

Query: 131 TSTADIEI-----------GETCSFMRSAASLKEW 154
           +  A +             G+TC+FMRS+ SLKEW
Sbjct: 696 SEGAKLGAKKKIIKRKVGSGDTCTFMRSSTSLKEW 730