Miyakogusa Predicted Gene

Lj0g3v0089819.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0089819.1 Non Chatacterized Hit- tr|F6I2E4|F6I2E4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,75,0.000008,seg,NULL; P-loop containing nucleoside triphosphate
hydrolases,NULL; Glucocorticoid receptor-like
(D,NODE_53013_length_993_cov_46.171200.path2.1
         (223 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07800.1 | Symbols:  | Thymidine kinase | chr3:2489944-249093...   313   7e-86
AT5G23070.1 | Symbols:  | Thymidine kinase | chr5:7741979-774282...   288   3e-78

>AT3G07800.1 | Symbols:  | Thymidine kinase | chr3:2489944-2490935
           REVERSE LENGTH=238
          Length = 238

 Score =  313 bits (801), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 148/207 (71%), Positives = 178/207 (85%), Gaps = 2/207 (0%)

Query: 13  GEIHLFVGPMFAGKTTSLLRRIKSEVDTGRNVVMLKSSKDTRYAIDSVVSHDGVKFPCWA 72
           G +H+ +GPMF+GK+TSLLRRIKSE+  GR+V MLKSSKDTRYA DSVV+HDG+ FPCWA
Sbjct: 31  GAVHVIMGPMFSGKSTSLLRRIKSEISDGRSVAMLKSSKDTRYAKDSVVTHDGIGFPCWA 90

Query: 73  LPDLMSFKEKYGHEAYQKLDVIGIDEAQFFEDLYDFCCKAADVDGKIVVVAGLDGDYLRR 132
           LPDLMSF EK+G +AY KLDVIGIDEAQFF DLY+FCCK AD DGKIV+VAGLDGDYLRR
Sbjct: 91  LPDLMSFPEKFGLDAYNKLDVIGIDEAQFFGDLYEFCCKVADDDGKIVIVAGLDGDYLRR 150

Query: 133 SFGSVLHIIPLADTVTKLTARCELCGKRAFFTLRKKIEETQTELIGGADLYMPVCRNHYR 192
           SFG+VL IIP+AD+VTKLTARCE+CG +AFFTLRK   +T+TELIGGAD+YMPVCR HY 
Sbjct: 151 SFGAVLDIIPIADSVTKLTARCEVCGHKAFFTLRKNC-DTRTELIGGADVYMPVCRKHYI 209

Query: 193 NSQVVMEAARSVLE-SQKVISDSLLEA 218
            + +V++A++ VLE S K  ++S + A
Sbjct: 210 TNHIVIKASKKVLEDSDKARAESCVAA 236


>AT5G23070.1 | Symbols:  | Thymidine kinase | chr5:7741979-7742827
           FORWARD LENGTH=282
          Length = 282

 Score =  288 bits (736), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 134/207 (64%), Positives = 174/207 (84%), Gaps = 5/207 (2%)

Query: 13  GEIHLFVGPMFAGKTTSLLRRIKSEVDTGRNVVMLKSSKDTRYAIDSVVSHDGVKFPCWA 72
           GEIH+ VGPMF+GKTT+LLRRI +E +TG+ + ++KS+KDTRY  +S+V+HDG K+PCW+
Sbjct: 77  GEIHVVVGPMFSGKTTTLLRRILAERETGKRIAIIKSNKDTRYCTESIVTHDGEKYPCWS 136

Query: 73  LPDLMSFKEKYGHEAYQ-KLDVIGIDEAQFFEDLYDFCCKAADVDGKIVVVAGLDGDYLR 131
           LPDL SFKE++G + Y+ +LDVIGIDEAQFF DLY+FC +AAD +GK V+VAGLDGD++R
Sbjct: 137 LPDLSSFKERFGFDDYENRLDVIGIDEAQFFGDLYEFCREAADKEGKTVIVAGLDGDFMR 196

Query: 132 RSFGSVLHIIPLADTVTKLTARCELCGKRAFFTLRKKIEETQTELIGGADLYMPVCRNHY 191
           R FGSVL +IP+ADTVTKLT+RCE+CGKRA FT+R K EE +TELIGGA++YMPVCR+HY
Sbjct: 197 RRFGSVLDLIPIADTVTKLTSRCEVCGKRALFTMR-KTEEKETELIGGAEVYMPVCRSHY 255

Query: 192 RNSQVVMEAARSVLES---QKVISDSL 215
              Q V+E AR+VL+S     V++ SL
Sbjct: 256 VCGQNVLETARAVLDSSNNHSVVASSL 282