Miyakogusa Predicted Gene

Lj0g3v0089459.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0089459.1 tr|G7IHS5|G7IHS5_MEDTR Protein
farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
OS,83.28,0,PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT,NULL; PROTEIN
FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANY,CUFF.4824.1
         (329 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59380.1 | Symbols: FTA, PLP, ATFTA, PFT/PGGT-IALPHA | farnes...   410   e-115
AT4G24490.2 | Symbols:  | RAB geranylgeranyl transferase alpha s...    87   1e-17
AT4G24490.1 | Symbols: RGTA1, ATRGTA1 | RAB geranylgeranyl trans...    87   1e-17
AT5G41820.1 | Symbols: RGTA2, ATRGTA2 | RAB geranylgeranyl trans...    60   3e-09

>AT3G59380.1 | Symbols: FTA, PLP, ATFTA, PFT/PGGT-IALPHA |
           farnesyltransferase A | chr3:21944209-21945781 FORWARD
           LENGTH=326
          Length = 326

 Score =  410 bits (1054), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/325 (60%), Positives = 254/325 (78%), Gaps = 4/325 (1%)

Query: 5   EERVRLRDRAEWSDVTPVPQNDGPNPVVPISYTEDFAEVMDYFRAIYLANEHSSRALSLT 64
           +E V L  R EWSDV P+ Q+DGPNPVVPI+Y E+F E MDYFRAIY ++E S RAL LT
Sbjct: 4   DETVPLSQRLEWSDVVPLTQDDGPNPVVPIAYKEEFRETMDYFRAIYFSDERSPRALRLT 63

Query: 65  AEVIHFNAGNYTVWHFRRLLLESLKVDLHGELEYVERVASANSKNYQIWHHRRWVAEKLG 124
            E +  N+GNYTVWHFRRL+LE+L  DL  ELE++ER+A  NSKNYQ+WHHRRWVAEKLG
Sbjct: 64  EETLLLNSGNYTVWHFRRLVLEALNHDLFEELEFIERIAEDNSKNYQLWHHRRWVAEKLG 123

Query: 125 VEARHIELEFTRKILSVDAKHYHAWSHRQWVLQTLGGWEDELNYCSQLLEEDIFNNSAWN 184
            +    ELEFTR++LS+DAKHYHAWSHRQW L+ LGGWEDEL+YC +LLE D+FNNSAWN
Sbjct: 124 PDVAGRELEFTRRVLSLDAKHYHAWSHRQWTLRALGGWEDELDYCHELLEADVFNNSAWN 183

Query: 185 QRYFVISRSPFLGGLKAMRESEVLYTVEAIIASPENESSWRYLRGLFKGETALYVNDPQV 244
           QRY+VI++SP LGGL+AMRESEV YT++AI+ +P NESSWRYL+ L+K +   +++DP V
Sbjct: 184 QRYYVITQSPLLGGLEAMRESEVSYTIKAILTNPANESSWRYLKALYKDDKESWISDPSV 243

Query: 245 PSVCLKILN-TKSNYLFALSTLLDLISLGYQPNEDFRDAIEAIKTSDFDKQDHDIARNIC 303
            SVCL +L+ T   + FALSTLLDL+  G +P  + +D++ A+     ++ + ++A  +C
Sbjct: 244 SSVCLNVLSRTDCFHGFALSTLLDLLCDGLRPTNEHKDSVRALAN---EEPETNLANLVC 300

Query: 304 SILEQVDPIRANYWIWRKCRVSQVA 328
           +IL +VDP+RANYW WRK +++  A
Sbjct: 301 TILGRVDPVRANYWAWRKSKITVAA 325


>AT4G24490.2 | Symbols:  | RAB geranylgeranyl transferase alpha
           subunit 1 | chr4:12655330-12658103 REVERSE LENGTH=678
          Length = 678

 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 102/202 (50%), Gaps = 25/202 (12%)

Query: 47  FRAIYLANEH----SSRALSLTAEVIHFNAGNYTVWHFRRLLLES-----------LKVD 91
            ++ ++ N H    ++ A+ L+ +++  N   YT W++R+L +E            +   
Sbjct: 27  LQSQFMTNHHDKIYTNEAIELSTKLLEINPEAYTAWNYRKLAVEDRLARIEPDPNLVSAI 86

Query: 92  LHGELEYVERVASANSKNYQIWHHRRWVAEKLGVEARHIELEFTRKILSVDAKHYHAWSH 151
           L  EL  VE     N K+Y  WHHR+WV  K G  +   EL    K   +D++++HAW++
Sbjct: 87  LDEELRVVESALRQNFKSYGAWHHRKWVLSK-GHSSVGNELRLLEKFQKLDSRNFHAWNY 145

Query: 152 RQWVLQ-TLGGWEDELNYCSQLLEEDIFNNSAWNQRYFVISR------SPFLGGLKAMRE 204
           R++V++ T    +DEL Y   ++  +  N SAW+ R  ++S         F+  +K   E
Sbjct: 146 RRFVVELTNRSEQDELQYTDDMINNNFSNYSAWHNRSVLLSSLLAQNADGFMPNIKIPEE 205

Query: 205 SEVLYTVEAIIASPENESSWRY 226
            + +++  AI   P+++S W Y
Sbjct: 206 YDFVHS--AIFTEPDDQSGWFY 225


>AT4G24490.1 | Symbols: RGTA1, ATRGTA1 | RAB geranylgeranyl
           transferase alpha subunit 1 | chr4:12655330-12658103
           REVERSE LENGTH=678
          Length = 678

 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 102/202 (50%), Gaps = 25/202 (12%)

Query: 47  FRAIYLANEH----SSRALSLTAEVIHFNAGNYTVWHFRRLLLES-----------LKVD 91
            ++ ++ N H    ++ A+ L+ +++  N   YT W++R+L +E            +   
Sbjct: 27  LQSQFMTNHHDKIYTNEAIELSTKLLEINPEAYTAWNYRKLAVEDRLARIEPDPNLVSAI 86

Query: 92  LHGELEYVERVASANSKNYQIWHHRRWVAEKLGVEARHIELEFTRKILSVDAKHYHAWSH 151
           L  EL  VE     N K+Y  WHHR+WV  K G  +   EL    K   +D++++HAW++
Sbjct: 87  LDEELRVVESALRQNFKSYGAWHHRKWVLSK-GHSSVGNELRLLEKFQKLDSRNFHAWNY 145

Query: 152 RQWVLQ-TLGGWEDELNYCSQLLEEDIFNNSAWNQRYFVISR------SPFLGGLKAMRE 204
           R++V++ T    +DEL Y   ++  +  N SAW+ R  ++S         F+  +K   E
Sbjct: 146 RRFVVELTNRSEQDELQYTDDMINNNFSNYSAWHNRSVLLSSLLAQNADGFMPNIKIPEE 205

Query: 205 SEVLYTVEAIIASPENESSWRY 226
            + +++  AI   P+++S W Y
Sbjct: 206 YDFVHS--AIFTEPDDQSGWFY 225


>AT5G41820.1 | Symbols: RGTA2, ATRGTA2 | RAB geranylgeranyl
           transferase alpha subunit 2 | chr5:16740804-16743433
           FORWARD LENGTH=687
          Length = 687

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 105/236 (44%), Gaps = 40/236 (16%)

Query: 26  DGPNPVVPISYTEDFAEVMDYFRAIYLANEHSSRALSLTAEVIHFNAGNYTVWHFRRLLL 85
           + PNP    +   +   +   F + +    ++  A+ L+A+++  N   YT W++ +L  
Sbjct: 8   EDPNPEETAAKALELRSLQSQFMSNHHQKIYTKEAIQLSAKLLITNPEFYTAWNYPKLAF 67

Query: 86  ESLKVD-----------LHGELEYVERVASANSKNYQIWHHRRWVAEKLGVEARHIELEF 134
           ES ++D           +  EL  V+     N K+Y  W+HR+WV  K G     +E E 
Sbjct: 68  ES-RLDEDSDPSLVNSIIDEELGVVQNALERNVKSYGAWYHRKWVLSKKGHYYPSLENEL 126

Query: 135 TRKILS----------------VDAKHYHAWSHRQWVLQ-TLGGWEDELNYCSQLLEEDI 177
             ++L+                  ++++HAW++R++V++ T    EDEL Y + ++ +  
Sbjct: 127 --QLLNDYQKQAHQKQDDEKQDDPSRNFHAWNYRRFVVELTKTSEEDELQYTTDMISDIS 184

Query: 178 FN-NSAWNQRYFVISR------SPFLGGLKAMRESEVLYTVEAIIASPENESSWRY 226
           F   SAW+ R  ++S         F+      RE +  Y   AI    E +S W Y
Sbjct: 185 FTIYSAWHYRSVLVSSLVAKKADGFMPKETIRRELD--YVHSAIFTLEEKQSGWFY 238