Miyakogusa Predicted Gene

Lj0g3v0089439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0089439.1 CUFF.4817.1
         (200 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06240.1 | Symbols:  | F-box family protein | chr3:1887336-18...    49   2e-06
AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ...    48   4e-06
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ...    48   4e-06

>AT3G06240.1 | Symbols:  | F-box family protein |
           chr3:1887336-1888619 FORWARD LENGTH=427
          Length = 427

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 20/121 (16%)

Query: 22  GRATMGVHIKGTLNWIAVLKIYENNFDGTENEIKWVDNGSCVILSFDLNKEEFVRLLLPV 81
           G  T GVH  G ++W+            TE+      +   V+++FD+  EEF  + +P 
Sbjct: 263 GSYTSGVHFNGAIHWVF-----------TESR-----HNQRVVVAFDIQTEEFREMPVPD 306

Query: 82  MP----HKFGDLVLGVLDECLCVFMFDKQYNFMIWQMKKFGVEESWTKLFSINYWKEIEP 137
                 H+F + V+G L+  LCV       +  IW M ++G  +SW+++     ++ ++P
Sbjct: 307 EAEDCSHRFSNFVVGSLNGRLCVVNSCYDVHDDIWVMSEYGEAKSWSRIRINLLYRSMKP 366

Query: 138 L 138
           L
Sbjct: 367 L 367


>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 63  VILSFDLNKEEFVRLLLPVMPHKFG---DLVLGVLDECLCVFMFDKQYNFMIWQMKKFGV 119
           +I+ FDL  EEF  +  P           + +GVLD CLC+     Q    +W MK++ V
Sbjct: 234 LIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNV 293

Query: 120 EESWTKLFSINYWKEIEPLGLWSP 143
            +SWTK+F++   K ++      P
Sbjct: 294 RDSWTKVFTVQKPKSVKSFSYMRP 317


>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 63  VILSFDLNKEEFVRLLLPVMPHKFG---DLVLGVLDECLCVFMFDKQYNFMIWQMKKFGV 119
           +I+ FDL  EEF  +  P           + +GVLD CLC+     Q    +W MK++ V
Sbjct: 234 LIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNV 293

Query: 120 EESWTKLFSINYWKEIEPLGLWSP 143
            +SWTK+F++   K ++      P
Sbjct: 294 RDSWTKVFTVQKPKSVKSFSYMRP 317