Miyakogusa Predicted Gene

Lj0g3v0089419.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0089419.1 Non Chatacterized Hit- tr|D7MVA0|D7MVA0_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,45.87,5e-19,N7-RELATED PROTEIN,NULL; F-BOX/LEUCINE RICH REPEAT
PROTEIN,NULL; no description,NULL; RNI-like,NULL,CUFF.4814.1
         (115 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G03630.1 | Symbols:  | RNI-like superfamily protein | chr4:16...    96   5e-21
AT4G05460.1 | Symbols:  | RNI-like superfamily protein | chr4:27...    93   4e-20
AT4G05497.1 | Symbols:  | RNI-like superfamily protein | chr4:27...    88   1e-18
AT4G05475.1 | Symbols:  | RNI-like superfamily protein | chr4:27...    87   2e-18
AT4G05470.1 | Symbols:  | RNI-like superfamily protein | chr4:27...    85   1e-17
AT5G52480.1 | Symbols:  | RNI-like superfamily protein | chr5:21...    84   1e-17
AT5G52480.2 | Symbols:  | RNI-like superfamily protein | chr5:21...    84   1e-17
AT4G05490.1 | Symbols:  | RNI-like superfamily protein | chr4:27...    71   2e-13
AT4G08980.5 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-...    61   2e-10
AT4G08980.4 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-...    61   2e-10
AT4G08980.2 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-...    61   2e-10
AT4G08980.3 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-...    61   2e-10
AT4G08980.1 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-...    61   2e-10
AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 | chr5...    56   4e-09

>AT4G03630.1 | Symbols:  | RNI-like superfamily protein |
           chr4:1608750-1610037 FORWARD LENGTH=220
          Length = 220

 Score = 95.9 bits (237), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 65/106 (61%), Gaps = 2/106 (1%)

Query: 3   LWKCLGITNKGLREAVTKLPMLEEFEISFKHLSKASLEFIGKYCPHLSVLKLNMKEVK-- 60
           L KC  IT  GL     KLP+LE+ E+S+  +   +LE IG  C HL  LKLN +  K  
Sbjct: 69  LAKCDQITGMGLFTEAMKLPLLEDLELSYCLIKGKNLEAIGFACLHLKTLKLNCQGFKFP 128

Query: 61  SFKFDDQAFAIAKTMPHLRQLQLLGNRLSNEGLLAILDGCPHLDLL 106
            F +D  A  IAK MP LR LQL GNR+S+ GL AI DGCPHL+ L
Sbjct: 129 GFTYDHDALGIAKRMPELRCLQLFGNRVSDVGLNAIFDGCPHLEHL 174


>AT4G05460.1 | Symbols:  | RNI-like superfamily protein |
           chr4:2761106-2762400 REVERSE LENGTH=302
          Length = 302

 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 68/108 (62%), Gaps = 6/108 (5%)

Query: 1   MRLWKCLGITNKGLREAVTKLPMLEEFEISFKHLSKASLEFIGKYCPHLSVLKLNMKEVK 60
           +RL +C  IT+ G  EAV KLP LEE E+S+   S  SL  +G+ C ++  LKLN    K
Sbjct: 120 LRLIRCSQITDDGFVEAVVKLP-LEELELSYCSFSVESLRVVGQCCLNMKTLKLNKHPQK 178

Query: 61  SFKFDDQAFAIAKTMPHLRQLQLLGNRLSNEGLLAILDGCP---HLDL 105
             + DD A AIA+TMP LR LQL GN LS+ GL AILD C    HLDL
Sbjct: 179 --ENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDL 224


>AT4G05497.1 | Symbols:  | RNI-like superfamily protein |
           chr4:2777903-2778801 REVERSE LENGTH=246
          Length = 246

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 66/100 (66%), Gaps = 4/100 (4%)

Query: 6   CLGITNKGLREAVTKLPMLEEFEISFKH-LSKASLEFIGKYCPHLSVLKLNMK-EVKSFK 63
           C  + ++G+ EA  KLP+LEE +I++K  + +  L+ +G+ CP+L  LKLN   +VK   
Sbjct: 130 CAPVLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNCTGDVKCC- 188

Query: 64  FDDQAFAIAKTMPHLRQLQLLGNRLSNEGLLAILDGCPHL 103
            D  A AIA+TMP LR LQL  N LS  GL AIL+GCPHL
Sbjct: 189 -DKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHL 227


>AT4G05475.1 | Symbols:  | RNI-like superfamily protein |
           chr4:2765962-2767957 REVERSE LENGTH=309
          Length = 309

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 66/118 (55%), Gaps = 19/118 (16%)

Query: 5   KCLGI------TNKGLREAVTKLPMLEEFEISFKHLSKASLEFIGKYCPHLSVLKLN--- 55
           K LGI      TNKG+   + KLP+LE   I F    K  L+ IG  CP L  LKLN   
Sbjct: 136 KSLGISIYEPMTNKGVMNGIEKLPLLETLVI-FHSSIKLDLKAIGHACPQLKTLKLNSLG 194

Query: 56  ---------MKEVKSFKFDDQAFAIAKTMPHLRQLQLLGNRLSNEGLLAILDGCPHLD 104
                    +  +   + DD A AIA++MP LR LQL+GN L+N GL AILDGCPHL+
Sbjct: 195 SELAHDISQVGYIPLLECDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLE 252


>AT4G05470.1 | Symbols:  | RNI-like superfamily protein |
           chr4:2763256-2765351 REVERSE LENGTH=304
          Length = 304

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 65/114 (57%), Gaps = 17/114 (14%)

Query: 9   ITNKGLREAVTKLPMLEEFEISFKHLSKASLEFIGKYCPHLSVLKLN------------- 55
           +T  G+  A+ K+P+LE  E++   + K  L+ IG  CP L  LKLN             
Sbjct: 152 VTKLGVVNAIAKIPLLETLEVTHSCI-KLDLKAIGHACPQLKTLKLNSLGRLWPASDKYD 210

Query: 56  ---MKEVKSFKFDDQAFAIAKTMPHLRQLQLLGNRLSNEGLLAILDGCPHLDLL 106
              + ++   + DD A AIA++MP L  LQL+ NRL+N GL AILDGCPHL+ L
Sbjct: 211 SNVLDDMGPLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHL 264


>AT5G52480.1 | Symbols:  | RNI-like superfamily protein |
           chr5:21296918-21297762 REVERSE LENGTH=241
          Length = 241

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/102 (51%), Positives = 66/102 (64%), Gaps = 1/102 (0%)

Query: 6   CLGITNKGLREAVTKLPMLEEFEISFKHLSKASLEFIGKYCPHLSVLKLN-MKEVKSFKF 64
           C  IT+ G  +AV KLPMLEE E+S   LS  S++  G  CP+L  L LN +  + S   
Sbjct: 61  CSEITDDGFVQAVVKLPMLEELEVSGISLSGESMKLAGLSCPNLKTLMLNRLFYLSSDDD 120

Query: 65  DDQAFAIAKTMPHLRQLQLLGNRLSNEGLLAILDGCPHLDLL 106
           D  A AIA++MP LR LQL GN+L+  GL AILDGCPHL+ L
Sbjct: 121 DHDAIAIAESMPKLRHLQLCGNKLTKTGLNAILDGCPHLEHL 162


>AT5G52480.2 | Symbols:  | RNI-like superfamily protein |
           chr5:21296918-21297529 REVERSE LENGTH=203
          Length = 203

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/102 (51%), Positives = 66/102 (64%), Gaps = 1/102 (0%)

Query: 6   CLGITNKGLREAVTKLPMLEEFEISFKHLSKASLEFIGKYCPHLSVLKLN-MKEVKSFKF 64
           C  IT+ G  +AV KLPMLEE E+S   LS  S++  G  CP+L  L LN +  + S   
Sbjct: 23  CSEITDDGFVQAVVKLPMLEELEVSGISLSGESMKLAGLSCPNLKTLMLNRLFYLSSDDD 82

Query: 65  DDQAFAIAKTMPHLRQLQLLGNRLSNEGLLAILDGCPHLDLL 106
           D  A AIA++MP LR LQL GN+L+  GL AILDGCPHL+ L
Sbjct: 83  DHDAIAIAESMPKLRHLQLCGNKLTKTGLNAILDGCPHLEHL 124


>AT4G05490.1 | Symbols:  | RNI-like superfamily protein |
           chr4:2771044-2772252 REVERSE LENGTH=307
          Length = 307

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 63/98 (64%)

Query: 9   ITNKGLREAVTKLPMLEEFEISFKHLSKASLEFIGKYCPHLSVLKLNMKEVKSFKFDDQA 68
           IT+ G+ EA+ KLP+LEE E+ +  + +   + IG+ CP+L  LKL        + D+ A
Sbjct: 136 ITSVGIFEAIVKLPLLEELELLYCSIEEEHFKTIGQACPNLKTLKLVGFWSHLNESDNDA 195

Query: 69  FAIAKTMPHLRQLQLLGNRLSNEGLLAILDGCPHLDLL 106
            AIA TMP L  LQL+ N L+N GL AILDGCPHL+ L
Sbjct: 196 LAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECL 233


>AT4G08980.5 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
           chr4:5758993-5760108 FORWARD LENGTH=317
          Length = 317

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 4/103 (3%)

Query: 8   GITNKGLREAVTKLPMLEEFEISFK-HLSKASLEFIGKYCPHLSVLKLNMK--EVKSF-K 63
           G+TN G+     KL  L   ++S+   +   +++ IGK+C  L     NM   +V S   
Sbjct: 117 GLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVS 176

Query: 64  FDDQAFAIAKTMPHLRQLQLLGNRLSNEGLLAILDGCPHLDLL 106
            DD+A+AIA TMP L++L++  +R+S EG+L IL  C  L+ L
Sbjct: 177 HDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFL 219


>AT4G08980.4 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
           chr4:5758993-5760108 FORWARD LENGTH=317
          Length = 317

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 4/103 (3%)

Query: 8   GITNKGLREAVTKLPMLEEFEISFK-HLSKASLEFIGKYCPHLSVLKLNMK--EVKSF-K 63
           G+TN G+     KL  L   ++S+   +   +++ IGK+C  L     NM   +V S   
Sbjct: 117 GLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVS 176

Query: 64  FDDQAFAIAKTMPHLRQLQLLGNRLSNEGLLAILDGCPHLDLL 106
            DD+A+AIA TMP L++L++  +R+S EG+L IL  C  L+ L
Sbjct: 177 HDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFL 219


>AT4G08980.2 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
           chr4:5758993-5760108 FORWARD LENGTH=317
          Length = 317

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 4/103 (3%)

Query: 8   GITNKGLREAVTKLPMLEEFEISFK-HLSKASLEFIGKYCPHLSVLKLNMK--EVKSF-K 63
           G+TN G+     KL  L   ++S+   +   +++ IGK+C  L     NM   +V S   
Sbjct: 117 GLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVS 176

Query: 64  FDDQAFAIAKTMPHLRQLQLLGNRLSNEGLLAILDGCPHLDLL 106
            DD+A+AIA TMP L++L++  +R+S EG+L IL  C  L+ L
Sbjct: 177 HDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFL 219


>AT4G08980.3 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
           chr4:5758993-5760108 FORWARD LENGTH=317
          Length = 317

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 4/103 (3%)

Query: 8   GITNKGLREAVTKLPMLEEFEISFK-HLSKASLEFIGKYCPHLSVLKLNMK--EVKSF-K 63
           G+TN G+     KL  L   ++S+   +   +++ IGK+C  L     NM   +V S   
Sbjct: 117 GLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVS 176

Query: 64  FDDQAFAIAKTMPHLRQLQLLGNRLSNEGLLAILDGCPHLDLL 106
            DD+A+AIA TMP L++L++  +R+S EG+L IL  C  L+ L
Sbjct: 177 HDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFL 219


>AT4G08980.1 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
           chr4:5758993-5760108 FORWARD LENGTH=317
          Length = 317

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 4/103 (3%)

Query: 8   GITNKGLREAVTKLPMLEEFEISFK-HLSKASLEFIGKYCPHLSVLKLNMK--EVKSF-K 63
           G+TN G+     KL  L   ++S+   +   +++ IGK+C  L     NM   +V S   
Sbjct: 117 GLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVS 176

Query: 64  FDDQAFAIAKTMPHLRQLQLLGNRLSNEGLLAILDGCPHLDLL 106
            DD+A+AIA TMP L++L++  +R+S EG+L IL  C  L+ L
Sbjct: 177 HDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFL 219


>AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 |
           chr5:23449916-23450915 REVERSE LENGTH=300
          Length = 300

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 16/115 (13%)

Query: 8   GITNKGLREAVTKLPMLEEFEISFKH-LSKASLEFIGKYCPHLSVLKLNMKEVKSFKF-- 64
            +T+  + +   +   L+E +IS+ H +S  +L  IG+ CP+L +LK N+ +  S     
Sbjct: 124 NVTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDWSSRHIGS 183

Query: 65  -------------DDQAFAIAKTMPHLRQLQLLGNRLSNEGLLAILDGCPHLDLL 106
                        D +A AI K M +L  L++  +RLS +GL +I +GCP L+ L
Sbjct: 184 VPTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYL 238