Miyakogusa Predicted Gene

Lj0g3v0087929.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0087929.1 Non Chatacterized Hit- tr|I1QFD0|I1QFD0_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,53.41,3e-17,FAMILY NOT NAMED,NULL; zf-LSD1,Zinc finger,
LSD1-type; LSD1: zinc finger domain, LSD1 subclass,Zinc ,CUFF.4702.1
         (87 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32540.1 | Symbols: LOL1 | lsd one like 1 | chr1:11768253-117...   137   1e-33
AT1G32540.3 | Symbols: LOL1 | lsd one like 1 | chr1:11768043-117...   134   1e-32
AT1G32540.2 | Symbols: LOL1 | lsd one like 1 | chr1:11768043-117...   134   1e-32
AT4G20380.7 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   114   1e-26
AT4G20380.2 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   114   1e-26
AT4G20380.6 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   114   1e-26
AT4G20380.5 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   114   1e-26
AT4G20380.4 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   114   1e-26
AT4G20380.3 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   114   1e-26
AT4G20380.1 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   114   1e-26
AT4G20380.8 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   103   2e-23
AT4G21610.1 | Symbols: LOL2 | lsd one like 2 | chr4:11489069-114...    55   7e-09

>AT1G32540.1 | Symbols: LOL1 | lsd one like 1 |
           chr1:11768253-11769591 FORWARD LENGTH=187
          Length = 187

 Score =  137 bits (345), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/86 (76%), Positives = 76/86 (88%), Gaps = 1/86 (1%)

Query: 2   QSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAAS 61
           QSQLVC+GCR++L+YP GAT+VCCA+CN +TAVPPPG +M+QL CGGC TLLMY RGA S
Sbjct: 65  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 124

Query: 62  VRCSCCHTVNLA-PANQVAHVPCGNC 86
           V+CSCCHTVNLA  ANQVAHV CGNC
Sbjct: 125 VQCSCCHTVNLALEANQVAHVNCGNC 150


>AT1G32540.3 | Symbols: LOL1 | lsd one like 1 |
           chr1:11768043-11769591 FORWARD LENGTH=154
          Length = 154

 Score =  134 bits (338), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/86 (76%), Positives = 76/86 (88%), Gaps = 1/86 (1%)

Query: 2   QSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAAS 61
           QSQLVC+GCR++L+YP GAT+VCCA+CN +TAVPPPG +M+QL CGGC TLLMY RGA S
Sbjct: 32  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 91

Query: 62  VRCSCCHTVNLA-PANQVAHVPCGNC 86
           V+CSCCHTVNLA  ANQVAHV CGNC
Sbjct: 92  VQCSCCHTVNLALEANQVAHVNCGNC 117


>AT1G32540.2 | Symbols: LOL1 | lsd one like 1 |
           chr1:11768043-11769591 FORWARD LENGTH=154
          Length = 154

 Score =  134 bits (338), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/86 (76%), Positives = 76/86 (88%), Gaps = 1/86 (1%)

Query: 2   QSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAAS 61
           QSQLVC+GCR++L+YP GAT+VCCA+CN +TAVPPPG +M+QL CGGC TLLMY RGA S
Sbjct: 32  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 91

Query: 62  VRCSCCHTVNLA-PANQVAHVPCGNC 86
           V+CSCCHTVNLA  ANQVAHV CGNC
Sbjct: 92  VQCSCCHTVNLALEANQVAHVNCGNC 117


>AT4G20380.7 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005012-11006438 FORWARD LENGTH=189
          Length = 189

 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 75/99 (75%), Gaps = 12/99 (12%)

Query: 1   MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGM--DMSQLYCGGCRTLLMYTRG 58
           MQ QLVC+GCR++L+YPRGA+NV CALCNTI  VPPP    DM+ + CGGCRT+LMYTRG
Sbjct: 6   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 65

Query: 59  AASVRCSCCHTVNLAPA--NQVAHVP--------CGNCR 87
           A+SVRCSCC T NL PA  NQVAH P        CG+CR
Sbjct: 66  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCR 104


>AT4G20380.2 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005012-11006438 FORWARD LENGTH=189
          Length = 189

 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 75/99 (75%), Gaps = 12/99 (12%)

Query: 1   MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGM--DMSQLYCGGCRTLLMYTRG 58
           MQ QLVC+GCR++L+YPRGA+NV CALCNTI  VPPP    DM+ + CGGCRT+LMYTRG
Sbjct: 6   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 65

Query: 59  AASVRCSCCHTVNLAPA--NQVAHVP--------CGNCR 87
           A+SVRCSCC T NL PA  NQVAH P        CG+CR
Sbjct: 66  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCR 104


>AT4G20380.6 | Symbols: LSD1 | LSD1 zinc finger family protein |
          chr4:11005027-11006438 FORWARD LENGTH=184
          Length = 184

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 75/99 (75%), Gaps = 12/99 (12%)

Query: 1  MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGM--DMSQLYCGGCRTLLMYTRG 58
          MQ QLVC+GCR++L+YPRGA+NV CALCNTI  VPPP    DM+ + CGGCRT+LMYTRG
Sbjct: 1  MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 59 AASVRCSCCHTVNLAPA--NQVAHVP--------CGNCR 87
          A+SVRCSCC T NL PA  NQVAH P        CG+CR
Sbjct: 61 ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCR 99


>AT4G20380.5 | Symbols: LSD1 | LSD1 zinc finger family protein |
          chr4:11005027-11006438 FORWARD LENGTH=184
          Length = 184

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 75/99 (75%), Gaps = 12/99 (12%)

Query: 1  MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGM--DMSQLYCGGCRTLLMYTRG 58
          MQ QLVC+GCR++L+YPRGA+NV CALCNTI  VPPP    DM+ + CGGCRT+LMYTRG
Sbjct: 1  MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 59 AASVRCSCCHTVNLAPA--NQVAHVP--------CGNCR 87
          A+SVRCSCC T NL PA  NQVAH P        CG+CR
Sbjct: 61 ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCR 99


>AT4G20380.4 | Symbols: LSD1 | LSD1 zinc finger family protein |
          chr4:11005027-11006438 FORWARD LENGTH=184
          Length = 184

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 75/99 (75%), Gaps = 12/99 (12%)

Query: 1  MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGM--DMSQLYCGGCRTLLMYTRG 58
          MQ QLVC+GCR++L+YPRGA+NV CALCNTI  VPPP    DM+ + CGGCRT+LMYTRG
Sbjct: 1  MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 59 AASVRCSCCHTVNLAPA--NQVAHVP--------CGNCR 87
          A+SVRCSCC T NL PA  NQVAH P        CG+CR
Sbjct: 61 ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCR 99


>AT4G20380.3 | Symbols: LSD1 | LSD1 zinc finger family protein |
          chr4:11005027-11006438 FORWARD LENGTH=184
          Length = 184

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 75/99 (75%), Gaps = 12/99 (12%)

Query: 1  MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGM--DMSQLYCGGCRTLLMYTRG 58
          MQ QLVC+GCR++L+YPRGA+NV CALCNTI  VPPP    DM+ + CGGCRT+LMYTRG
Sbjct: 1  MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 59 AASVRCSCCHTVNLAPA--NQVAHVP--------CGNCR 87
          A+SVRCSCC T NL PA  NQVAH P        CG+CR
Sbjct: 61 ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCR 99


>AT4G20380.1 | Symbols: LSD1 | LSD1 zinc finger family protein |
          chr4:11005027-11006438 FORWARD LENGTH=184
          Length = 184

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 75/99 (75%), Gaps = 12/99 (12%)

Query: 1  MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGM--DMSQLYCGGCRTLLMYTRG 58
          MQ QLVC+GCR++L+YPRGA+NV CALCNTI  VPPP    DM+ + CGGCRT+LMYTRG
Sbjct: 1  MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 59 AASVRCSCCHTVNLAPA--NQVAHVP--------CGNCR 87
          A+SVRCSCC T NL PA  NQVAH P        CG+CR
Sbjct: 61 ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCR 99


>AT4G20380.8 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005027-11006438 FORWARD LENGTH=210
          Length = 210

 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 75/125 (60%), Gaps = 38/125 (30%)

Query: 1   MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGM--DMSQLYCGGCRTLLMYTRG 58
           MQ QLVC+GCR++L+YPRGA+NV CALCNTI  VPPP    DM+ + CGGCRT+LMYTRG
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 59  AASVRCSCCHTVNLAP----------------------------ANQVAHVP-------- 82
           A+SVRCSCC T NL P                            +NQVAH P        
Sbjct: 61  ASSVRCSCCQTTNLVPESSFTLLFDNILKVLKTKLLDGPGGLAHSNQVAHAPSSQVAQIN 120

Query: 83  CGNCR 87
           CG+CR
Sbjct: 121 CGHCR 125


>AT4G21610.1 | Symbols: LOL2 | lsd one like 2 |
           chr4:11489069-11490300 FORWARD LENGTH=155
          Length = 155

 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 2   QSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAAS 61
           ++Q+VC  CR +L Y RG+ +V C+ C T+  V      + Q+ C  C+ LLMY  GA +
Sbjct: 58  KAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLE-ANQVGQVNCNNCKLLLMYPYGAPA 116

Query: 62  VRCSCCHTV 70
           VRCS C++V
Sbjct: 117 VRCSSCNSV 125



 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 9   GCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAASVRCSCCH 68
           G  S +L P   T       N  T   P   + +Q+ CG CR LL Y RG+  V+CS C 
Sbjct: 29  GWESAVLPPPIVTITAAVNPNPTTVEIP---EKAQMVCGSCRRLLSYLRGSKHVKCSSCQ 85

Query: 69  TVNLA-PANQVAHVPCGNCR 87
           TVNL   ANQV  V C NC+
Sbjct: 86  TVNLVLEANQVGQVNCNNCK 105