Miyakogusa Predicted Gene

Lj0g3v0087919.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0087919.1 Non Chatacterized Hit- tr|I1R7S0|I1R7S0_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=3
SV=1,47.42,0.00000000000005,seg,NULL; A_tha_TIGR01569: plant integral
membrane protein T,Uncharacterised protein family UPF0497,,CUFF.4700.1
         (151 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20390.1 | Symbols:  | Uncharacterised protein family (UPF049...    89   1e-18
AT5G44550.1 | Symbols:  | Uncharacterised protein family (UPF049...    82   1e-16

>AT4G20390.1 | Symbols:  | Uncharacterised protein family (UPF0497)
           | chr4:11007068-11007869 FORWARD LENGTH=197
          Length = 197

 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 55/74 (74%)

Query: 49  NKQSKNLVVATIGTNPITATISAKFHHTPAFVFFVIANGIASVHNMVVIALDFLGPRFDN 108
           NK++K LVVATIGT PI AT++AKF HTPAFVFFVIAN + S HN+++I +     + + 
Sbjct: 40  NKETKTLVVATIGTVPIKATLTAKFQHTPAFVFFVIANVMVSFHNLLMIVVQIFSRKLEY 99

Query: 109 QGLYLTLIAIFDMV 122
           +GL L  IAI DM+
Sbjct: 100 KGLRLLSIAILDML 113


>AT5G44550.1 | Symbols:  | Uncharacterised protein family (UPF0497)
           | chr5:17942100-17943174 REVERSE LENGTH=197
          Length = 197

 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 4/84 (4%)

Query: 49  NKQSKNLVVATIGTNPITATISAKFHHTPAFVFFVIANGIASVHNMVVIALDFLGPRFDN 108
           NK++K  +V  +G  PI AT +AKF HTPAFVFFV+AN + S HN+++IAL   G + + 
Sbjct: 40  NKETKTFIVGKVGNTPIQATFTAKFDHTPAFVFFVVANAMVSFHNLLMIALQIFGGKMEF 99

Query: 109 QGLYLTLIAIFDMVQNGSHVTLIT 132
            G  L  +AI DM+    +VTLI+
Sbjct: 100 TGFRLLSVAILDML----NVTLIS 119