Miyakogusa Predicted Gene

Lj0g3v0087839.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0087839.2 tr|Q9W0I7|Q9W0I7_DROME IP07275p OS=Drosophila
melanogaster GN=Psf1 PE=2 SV=2,32.38,3e-19,PARTNER OF SLD5,NULL;
PARTNER OF SLD5,GINS complex, subunit Psf1; Sld5,GINS
complex,CUFF.4694.2
         (199 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80190.1 | Symbols: PSF1 | partner of SLD five 1 | chr1:30159...   276   7e-75

>AT1G80190.1 | Symbols: PSF1 | partner of SLD five 1 |
           chr1:30159476-30161115 FORWARD LENGTH=201
          Length = 201

 Score =  276 bits (706), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 134/201 (66%), Positives = 158/201 (78%), Gaps = 4/201 (1%)

Query: 1   MYGRKACQLVKELAGGEKGQFTPFNSDLFEQVVAECSQHHLELQSLIRKIQDEGLDVQTA 60
           MYGRK  QL+K+ A GEKGQ  PFNS LF++ + EC Q+H  +QSLIRK+Q EGLDVQ  
Sbjct: 1   MYGRKGYQLIKDFATGEKGQLKPFNSKLFDETIEECDQNHHLIQSLIRKMQQEGLDVQNN 60

Query: 61  RNADHYGALIHHLSLVRNKRCLMAYTYNRAENLRSLVWKVG---HGLPQEIEEKICHSEK 117
           RNADHYGALIHHL+L+RNKRCLMAY YNRAE +R L W+VG     LP EI+EK+   EK
Sbjct: 61  RNADHYGALIHHLALIRNKRCLMAYVYNRAEIVRDLAWRVGLELLDLPSEIQEKLTTLEK 120

Query: 118 EYFKKHSSALKSYMSQLLVDLTVDMVPPKDPCIQVRVLEDIGEGIVLSDDKTYNLALQSI 177
           EYFK HS ALKSYM ++ ++L VDMVPPKDP I+VR+L+DI EGIVLS DKT N A  S+
Sbjct: 121 EYFKNHSVALKSYMGKVGIELNVDMVPPKDPYIKVRILDDIDEGIVLS-DKTTNFARHSM 179

Query: 178 HLLKRTDAEQFIARGLMEEIT 198
           H LKRTDAE +IARG MEE+T
Sbjct: 180 HFLKRTDAEPYIARGQMEELT 200