Miyakogusa Predicted Gene

Lj0g3v0087829.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0087829.1 Non Chatacterized Hit- tr|F6HVB5|F6HVB5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,81.18,0,seg,NULL; coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; THO
COMPLEX SUBUNIT 1,NULL; efThoc1,THO comple,CUFF.4693.1
         (573 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G09860.1 | Symbols: AtTHO1, THO1, AtHPR1, HPR1 | nuclear matr...   833   0.0  
AT5G09860.2 | Symbols: THO1 | nuclear matrix protein-related | c...   827   0.0  

>AT5G09860.1 | Symbols: AtTHO1, THO1, AtHPR1, HPR1 | nuclear matrix
           protein-related | chr5:3066815-3070733 FORWARD
           LENGTH=599
          Length = 599

 Score =  833 bits (2152), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/569 (70%), Positives = 462/569 (81%), Gaps = 11/569 (1%)

Query: 1   MEAFKRAIIQPGPPESFALQTVQEVIKPQKQTKLAQDXXXXXXXXXXXXXXXFVSAAVQS 60
           M+AF+ AI+Q  P E+FAL+TVQ  I+PQKQTKLAQD                V+AA QS
Sbjct: 1   MDAFRDAILQRAPIETFALKTVQHFIQPQKQTKLAQDENQMLENMLRTLLQELVAAAAQS 60

Query: 61  GEKIMQFGQSIDTGETS---QGHIPRLLDIVLYLCEKEHIEGGMIFQLLEDLTEMSTMTN 117
           GE+IMQ+GQ ID  +      G IP LLD+VLYLCEKEH+EGGMIFQLLEDLTEMSTM N
Sbjct: 61  GEQIMQYGQLIDDDDDDDDIHGQIPHLLDVVLYLCEKEHVEGGMIFQLLEDLTEMSTMKN 120

Query: 118 CKDIFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFP 177
           CKD+FGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFP
Sbjct: 121 CKDVFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFP 180

Query: 178 LSERSALNIKGVFNTSNVTKYEKEPLEGICIDFNFYETFWGLQEYFSNPSSIIHAPAKWK 237
           LSERSA+NIKGVFNTSN TKYEK+P +GI +DFNFY+TFW LQEYF NP+S+  A  KW+
Sbjct: 181 LSERSAVNIKGVFNTSNETKYEKDPPKGISVDFNFYKTFWSLQEYFCNPASLTSASTKWQ 240

Query: 238 KFTSSLSVVLNTFEAQPLSDEEGDANNLEEETVNFSIKYLTSSKLMGLELKDPSFRRHVL 297
           KF+SSL+VVLNTF+AQPLS+EEG+AN+LEEE   F+IKYLTSSKLMGLELKD SFRRH+L
Sbjct: 241 KFSSSLAVVLNTFDAQPLSEEEGEANSLEEEAATFNIKYLTSSKLMGLELKDSSFRRHIL 300

Query: 298 VQCLILFDYLKAPGKTDKDSPSENMKEEITSCEERVKKLLELTPPKGKEFLHKIEHILER 357
           +QCLI+FDYL+APGK DKD PSE MKEE+ SCE+RVKKLLE+TPPKGKEFL  +EHILER
Sbjct: 301 LQCLIMFDYLRAPGKNDKDLPSETMKEELKSCEDRVKKLLEITPPKGKEFLRAVEHILER 360

Query: 358 EKNWVWWKRDGCLPYEKQPMEKKTVSDVARKRKPRWRMGNKELSQLWKWADQNPNALTDP 417
           EKNWVWWKRDGC P+EKQP++KK+ +   +KR+ RWR+GNKELSQLW+WADQNPNALTD 
Sbjct: 361 EKNWVWWKRDGCPPFEKQPIDKKSPNAGQKKRRQRWRLGNKELSQLWRWADQNPNALTDS 420

Query: 418 QRVQTPLIMEYWKPLAEDMDPAAGIEAEYHHKNNRVYCWKGLRLSARQDLEGFSKFTDNG 477
           QRV+TP I +YWKPLAEDMDP+AGIE EYHHKNNRVYCWKGLR +ARQDLEGFS+FT+ G
Sbjct: 421 QRVRTPDIADYWKPLAEDMDPSAGIEDEYHHKNNRVYCWKGLRFTARQDLEGFSRFTEMG 480

Query: 478 IEGVVPLELLPSDVRTKFQSKSNDXXXXXXXXXXXXXXHQVEENQVATPATENDGEGIRT 537
           IEGVVP+ELLP +VR+K+Q+K N+              H+ E NQ+    +E + EG R 
Sbjct: 481 IEGVVPVELLPPEVRSKYQAKPNEKAKRAKKEETKGGSHETEGNQIGVSNSEAEAEGGRG 540

Query: 538 DAAATPMEFDAATVPDLQGGTPTPEELQK 566
           DA    ME DA         TPTPEE Q+
Sbjct: 541 DAET--MESDAI------ADTPTPEEQQR 561


>AT5G09860.2 | Symbols: THO1 | nuclear matrix protein-related |
           chr5:3066815-3070733 FORWARD LENGTH=598
          Length = 598

 Score =  827 bits (2136), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/569 (70%), Positives = 461/569 (81%), Gaps = 12/569 (2%)

Query: 1   MEAFKRAIIQPGPPESFALQTVQEVIKPQKQTKLAQDXXXXXXXXXXXXXXXFVSAAVQS 60
           M+AF+ AI+Q  P E+FAL+TVQ  I+PQKQTKLAQD                V+AA QS
Sbjct: 1   MDAFRDAILQRAPIETFALKTVQHFIQPQKQTKLAQDENQMLENMLRTLLQELVAAAAQS 60

Query: 61  GEKIMQFGQSIDTGETS---QGHIPRLLDIVLYLCEKEHIEGGMIFQLLEDLTEMSTMTN 117
           GE+IMQ+GQ ID  +      G IP LLD+VLYLCEKEH+EGGMIFQLLEDLTEMSTM N
Sbjct: 61  GEQIMQYGQLIDDDDDDDDIHGQIPHLLDVVLYLCEKEHVEGGMIFQLLEDLTEMSTMKN 120

Query: 118 CKDIFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFP 177
           CKD+FGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFP
Sbjct: 121 CKDVFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFP 180

Query: 178 LSERSALNIKGVFNTSNVTKYEKEPLEGICIDFNFYETFWGLQEYFSNPSSIIHAPAKWK 237
           LSERSA+NIKGVFNTSN TKYEK+P +GI +DFNFY+TFW LQEYF NP+S+  A  KW+
Sbjct: 181 LSERSAVNIKGVFNTSNETKYEKDPPKGISVDFNFYKTFWSLQEYFCNPASLTSASTKWQ 240

Query: 238 KFTSSLSVVLNTFEAQPLSDEEGDANNLEEETVNFSIKYLTSSKLMGLELKDPSFRRHVL 297
           KF+SSL+VVLNTF+AQPLS+EEG+AN+LEEE   F+IKYLTSSKLMGLELKD SFRRH+L
Sbjct: 241 KFSSSLAVVLNTFDAQPLSEEEGEANSLEEEAATFNIKYLTSSKLMGLELKDSSFRRHIL 300

Query: 298 VQCLILFDYLKAPGKTDKDSPSENMKEEITSCEERVKKLLELTPPKGKEFLHKIEHILER 357
           +QCLI+FDYL+APGK DKD PSE M EE+ SCE+RVKKLLE+TPPKGKEFL  +EHILER
Sbjct: 301 LQCLIMFDYLRAPGKNDKDLPSETM-EELKSCEDRVKKLLEITPPKGKEFLRAVEHILER 359

Query: 358 EKNWVWWKRDGCLPYEKQPMEKKTVSDVARKRKPRWRMGNKELSQLWKWADQNPNALTDP 417
           EKNWVWWKRDGC P+EKQP++KK+ +   +KR+ RWR+GNKELSQLW+WADQNPNALTD 
Sbjct: 360 EKNWVWWKRDGCPPFEKQPIDKKSPNAGQKKRRQRWRLGNKELSQLWRWADQNPNALTDS 419

Query: 418 QRVQTPLIMEYWKPLAEDMDPAAGIEAEYHHKNNRVYCWKGLRLSARQDLEGFSKFTDNG 477
           QRV+TP I +YWKPLAEDMDP+AGIE EYHHKNNRVYCWKGLR +ARQDLEGFS+FT+ G
Sbjct: 420 QRVRTPDIADYWKPLAEDMDPSAGIEDEYHHKNNRVYCWKGLRFTARQDLEGFSRFTEMG 479

Query: 478 IEGVVPLELLPSDVRTKFQSKSNDXXXXXXXXXXXXXXHQVEENQVATPATENDGEGIRT 537
           IEGVVP+ELLP +VR+K+Q+K N+              H+ E NQ+    +E + EG R 
Sbjct: 480 IEGVVPVELLPPEVRSKYQAKPNEKAKRAKKEETKGGSHETEGNQIGVSNSEAEAEGGRG 539

Query: 538 DAAATPMEFDAATVPDLQGGTPTPEELQK 566
           DA    ME DA         TPTPEE Q+
Sbjct: 540 DAET--MESDAI------ADTPTPEEQQR 560