Miyakogusa Predicted Gene

Lj0g3v0087739.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0087739.1 tr|Q0DLF3|Q0DLF3_ORYSJ Os05g0104900 protein
(Fragment) OS=Oryza sativa subsp. japonica
GN=Os05g01049,76.79,1e-18,U-box,U box domain; no description,Zinc
finger, RING/FYVE/PHD-type; PUTATIVE UNCHARACTERIZED
PROTEIN,CUFF.4688.1
         (140 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07370.1 | Symbols: ATCHIP, CHIP | carboxyl terminus of HSC70...   197   2e-51
AT3G11840.1 | Symbols: PUB24 | plant U-box 24 | chr3:3736578-373...    54   3e-08
AT2G45920.1 | Symbols:  | U-box domain-containing protein | chr2...    49   2e-06
AT1G01670.1 | Symbols:  | RING/U-box superfamily protein | chr1:...    49   2e-06
AT5G51270.1 | Symbols:  | U-box domain-containing protein kinase...    47   5e-06
AT5G42340.1 | Symbols: PUB15 | Plant U-Box 15 | chr5:16928086-16...    47   5e-06
AT3G61390.2 | Symbols:  | RING/U-box superfamily protein | chr3:...    46   9e-06
AT5G67340.1 | Symbols:  | ARM repeat superfamily protein | chr5:...    46   9e-06

>AT3G07370.1 | Symbols: ATCHIP, CHIP | carboxyl terminus of
           HSC70-interacting protein | chr3:2358323-2360301 REVERSE
           LENGTH=278
          Length = 278

 Score =  197 bits (500), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 92/140 (65%), Positives = 111/140 (79%)

Query: 1   MVEEIWQELAKAKYQEWERSSTKRSWELQSLKQACESALKEKHFLDGSDMEGFVDDATTT 60
           MVEEIW+EL+KAKY EWE  S  RSWEL SLK+ CE+AL ++  LD S  E   D+A T 
Sbjct: 117 MVEEIWEELSKAKYMEWELVSAMRSWELNSLKETCEAALNQQRALDMSRTEESSDEAYTA 176

Query: 61  HLKQLEALEGVFNKAAEADIPAEVPDYLCCKITLDIFHDPVITPSGLTYERAVILDHLQK 120
           H ++L+ALE VF KAAE D P EVPDYLCC ITL+IF DPVI+PSG+TYERA IL+HL+K
Sbjct: 177 HTERLKALERVFKKAAEEDKPTEVPDYLCCNITLEIFRDPVISPSGVTYERAAILEHLKK 236

Query: 121 VGRFDPVTREPLDPSQLVPN 140
           VG+FDP+TRE +DP+ LVPN
Sbjct: 237 VGKFDPITREKIDPANLVPN 256


>AT3G11840.1 | Symbols: PUB24 | plant U-box 24 |
           chr3:3736578-3738250 REVERSE LENGTH=470
          Length = 470

 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 71  VFNKAAEADIPAEVPDYLCCKITLDIFHDPVITPSGLTYERAVILDHLQKVGRFDPVTRE 130
           VF +  + +   E+P+Y  C I+L+I  DPV T SG+TY+R  I+  L+KV    PVT++
Sbjct: 11  VFPQMDQEEEEIEIPNYFICPISLEIMKDPVTTVSGITYDRQNIVKWLEKVPSC-PVTKQ 69

Query: 131 PLD-PSQLVPN 140
           PL   S L PN
Sbjct: 70  PLPLDSDLTPN 80


>AT2G45920.1 | Symbols:  | U-box domain-containing protein |
           chr2:18899363-18901097 FORWARD LENGTH=400
          Length = 400

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 36/73 (49%)

Query: 68  LEGVFNKAAEADIPAEVPDYLCCKITLDIFHDPVITPSGLTYERAVILDHLQKVGRFDPV 127
           +E +  + + +D   E P Y  C I+L++  DP +   G TYE   I   LQ      P+
Sbjct: 309 VEELRKEVSRSDEHREAPQYFICPISLEVMKDPQLAADGFTYEAEAISTWLQGGHETSPM 368

Query: 128 TREPLDPSQLVPN 140
           T   L  ++LVPN
Sbjct: 369 TNTKLHHTKLVPN 381


>AT1G01670.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:242943-245163 REVERSE LENGTH=365
          Length = 365

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 1/103 (0%)

Query: 39  LKEKHFLDGSDMEGFVDDATTTHLKQLEALE-GVFNKAAEADIPAEVPDYLCCKITLDIF 97
           LKE+H+ D   +E   D+A  T  + L ALE G  +   +  +  E P    C I+ DI 
Sbjct: 248 LKEQHYADCRLLEKERDEAIKTTEELLRALEKGESSIPLQWSVSIEPPQCFICPISKDIM 307

Query: 98  HDPVITPSGLTYERAVILDHLQKVGRFDPVTREPLDPSQLVPN 140
            +P +   G TYE       L   G   P+T   L+   L+PN
Sbjct: 308 QNPHVAADGYTYEADEFRRWLNHGGEKSPMTNLRLENRNLIPN 350


>AT5G51270.1 | Symbols:  | U-box domain-containing protein kinase
           family protein | chr5:20835137-20838262 REVERSE
           LENGTH=819
          Length = 819

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 12/120 (10%)

Query: 25  SWELQSLKQACESALK--EKHFLDGSDMEGFVDDATTTHLKQLEALEGVFNKAAEA--DI 80
           +W ++  +Q    AL+  E    D  D+E  +       L  LE+L+ V +KA  +    
Sbjct: 693 NWPIEETRQLAALALQCTELRSKDRPDLEDQI-------LPVLESLKKVADKARNSLSAA 745

Query: 81  PAEVPDYLCCKITLDIFHDPVITPSGLTYERAVILDHLQKVGRFDPVTREPLDPSQLVPN 140
           P++ P +  C +  D+  +P I   G TY+R  I + ++   R  PVT  PL    L+PN
Sbjct: 746 PSQPPSHFFCPLLKDVMKEPCIAADGYTYDRRAIEEWMEN-HRTSPVTNSPLQNVNLLPN 804


>AT5G42340.1 | Symbols: PUB15 | Plant U-Box 15 |
           chr5:16928086-16930367 REVERSE LENGTH=660
          Length = 660

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 62  LKQLEALEG-------VFNKAAEADIPAEVPDYLCCKITLDIFHDPVITPSGLTYERAVI 114
            K+L+ LE        V NKA        +P    C ITL+I  DPVI  +G TYE+  I
Sbjct: 261 FKKLQGLEATDILYQPVINKAITKSTSLILPHEFLCPITLEIMLDPVIIATGQTYEKESI 320

Query: 115 LDHLQKVGRFDPVTREPLDPSQLVPN 140
                   +  P TR+ LD   L PN
Sbjct: 321 QKWFDAGHKTCPKTRQELDHLSLAPN 346


>AT3G61390.2 | Symbols:  | RING/U-box superfamily protein |
           chr3:22716418-22718270 FORWARD LENGTH=435
          Length = 435

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 15/148 (10%)

Query: 6   WQELAKAKYQEWERSSTKRSWELQSLKQACES----------ALKEKHFLDGSDMEGFVD 55
           ++EL + K  E E++  KR+ EL+ ++   E+           L+EK+ L      G  +
Sbjct: 264 FEELKQRK--ETEKALRKRNDELEKMRSESETQITESYTVIRKLQEKNNLSMETFRGIRE 321

Query: 56  DAT--TTHLKQLEALEGVFNKA-AEADIPAEVPDYLCCKITLDIFHDPVITPSGLTYERA 112
           +       L+++  L+G   +  A      E P Y  C IT DI  DP +   G TYE  
Sbjct: 322 EQEELKIKLREVSKLKGKREEEEASTSNHREPPQYFICPITHDIMEDPHVAADGFTYEGE 381

Query: 113 VILDHLQKVGRFDPVTREPLDPSQLVPN 140
            I    ++     P+  + L  + LVPN
Sbjct: 382 AISRWFERGHETSPMINKRLPHTSLVPN 409


>AT5G67340.1 | Symbols:  | ARM repeat superfamily protein |
           chr5:26864996-26867450 FORWARD LENGTH=707
          Length = 707

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 3/103 (2%)

Query: 39  LKEKHFLDGSDMEG-FVDDATTTHLKQLEALEGVFNKAAEADIPAEVPDYLCCKITLDIF 97
           +KE   L  +D E  ++D   +   +  E L  +  K A+   P  VP    C ++L++ 
Sbjct: 196 MKEDAELTDNDTEAEYLDGLISLTTQMHEYLSDI--KQAQLRCPVRVPSDFRCSLSLELM 253

Query: 98  HDPVITPSGLTYERAVILDHLQKVGRFDPVTREPLDPSQLVPN 140
            DPVI  SG T+ER  I   +       P TR+ L  + L PN
Sbjct: 254 TDPVIVASGQTFERVFIQKWIDMGLMVCPKTRQALSHTTLTPN 296