Miyakogusa Predicted Gene

Lj0g3v0087729.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0087729.1 Non Chatacterized Hit- tr|K4CAH0|K4CAH0_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,75.86,5e-19,TPR,Tetratricopeptide repeat;
TPR_REGION,Tetratricopeptide repeat-containing domain; PUTATIVE
UNCHAR,CUFF.4687.1
         (60 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07370.1 | Symbols: ATCHIP, CHIP | carboxyl terminus of HSC70...    89   5e-19
AT2G42810.2 | Symbols: PP5, PP5.2 | protein phosphatase 5.2 | ch...    50   2e-07
AT2G42810.1 | Symbols: PAPP5, PP5 | protein phosphatase 5.2 | ch...    50   3e-07

>AT3G07370.1 | Symbols: ATCHIP, CHIP | carboxyl terminus of
          HSC70-interacting protein | chr3:2358323-2360301
          REVERSE LENGTH=278
          Length = 278

 Score = 89.4 bits (220), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 40/54 (74%), Positives = 46/54 (85%)

Query: 6  TAAKQAEQLRIDGNSYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHLKRK 59
           A+  AE+L+ DGN+ FKK+RFGAAIDAYTEAI L PNVP YWTNRALCH+KRK
Sbjct: 5  VASAMAERLKEDGNNCFKKERFGAAIDAYTEAIALSPNVPAYWTNRALCHMKRK 58


>AT2G42810.2 | Symbols: PP5, PP5.2 | protein phosphatase 5.2 |
          chr2:17812336-17815896 REVERSE LENGTH=538
          Length = 538

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 29/48 (60%)

Query: 10 QAEQLRIDGNSYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHLK 57
          +AE+ +   N  FK  ++ +AID YT+AI L  N  VYW NRA  H K
Sbjct: 12 RAEEFKSQANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANRAFAHTK 59


>AT2G42810.1 | Symbols: PAPP5, PP5 | protein phosphatase 5.2 |
          chr2:17812336-17815896 REVERSE LENGTH=484
          Length = 484

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 29/48 (60%)

Query: 10 QAEQLRIDGNSYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHLK 57
          +AE+ +   N  FK  ++ +AID YT+AI L  N  VYW NRA  H K
Sbjct: 12 RAEEFKSQANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANRAFAHTK 59