Miyakogusa Predicted Gene

Lj0g3v0087639.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0087639.1 Non Chatacterized Hit- tr|I3S5U2|I3S5U2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.07,0,FYVE/PHD
zinc finger,Zinc finger, FYVE/PHD-type; ZF_PHD_1,Zinc finger,
PHD-type, conserved site; Bro,CUFF.4701.1
         (216 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22140.2 | Symbols: EBS | PHD finger family protein / bromo-a...   402   e-112
AT4G22140.1 | Symbols: EBS | PHD finger family protein / bromo-a...   391   e-109
AT4G39100.1 | Symbols: SHL1 | PHD finger family protein / bromo-...   282   9e-77
AT4G04260.1 | Symbols:  | Bromo-adjacent homology (BAH) domain-c...   269   1e-72
AT4G39100.2 | Symbols: SHL1 | PHD finger family protein / bromo-...   243   7e-65
AT4G14700.1 | Symbols: ATORC1A, ORC1A | origin recognition compl...    59   3e-09
AT4G11560.1 | Symbols:  | bromo-adjacent homology (BAH) domain-c...    56   2e-08
AT4G12620.1 | Symbols: ORC1B, ATORC1B, UNE13 | origin of replica...    55   4e-08
AT4G23120.1 | Symbols:  | Bromo-adjacent homology (BAH) domain-c...    52   4e-07

>AT4G22140.2 | Symbols: EBS | PHD finger family protein /
           bromo-adjacent homology (BAH) domain-containing protein
           | chr4:11728093-11730230 REVERSE LENGTH=224
          Length = 224

 Score =  402 bits (1032), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/224 (84%), Positives = 201/224 (89%), Gaps = 8/224 (3%)

Query: 1   MAKTRPG--------RKDMDSYTIKGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDT 52
           MAKTRPG        RK++DSYTIKGTNK+VRAGDCVLMRPSD  KPPYVARVEKIE D 
Sbjct: 1   MAKTRPGVASKIKTGRKELDSYTIKGTNKVVRAGDCVLMRPSDAGKPPYVARVEKIEADA 60

Query: 53  RSNVKVRVRWYYRPEESIGGRRQFHGVKELFLSDHFDVQSAHTIEGKCIVHSFKNYTKLE 112
           R+NVKV  RWYYRPEES+GGRRQFHG KELFLSDHFDVQSAHTIEGKCIVH+FKNYT+LE
Sbjct: 61  RNNVKVHCRWYYRPEESLGGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHTFKNYTRLE 120

Query: 113 NVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTI 172
           NVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTI
Sbjct: 121 NVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTI 180

Query: 173 EEAKKLEHFVCSECSSDDDMKKPQATFHVSPGSDIKVEPKRRKR 216
           EEAKKL+HFVC+ECSSDDD+KK Q  F  SP  D+KVE KRRKR
Sbjct: 181 EEAKKLDHFVCAECSSDDDVKKSQNGFTSSPADDVKVETKRRKR 224


>AT4G22140.1 | Symbols: EBS | PHD finger family protein /
           bromo-adjacent homology (BAH) domain-containing protein
           | chr4:11728556-11730230 REVERSE LENGTH=234
          Length = 234

 Score =  391 bits (1004), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 184/217 (84%), Positives = 195/217 (89%), Gaps = 8/217 (3%)

Query: 1   MAKTRPG--------RKDMDSYTIKGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDT 52
           MAKTRPG        RK++DSYTIKGTNK+VRAGDCVLMRPSD  KPPYVARVEKIE D 
Sbjct: 1   MAKTRPGVASKIKTGRKELDSYTIKGTNKVVRAGDCVLMRPSDAGKPPYVARVEKIEADA 60

Query: 53  RSNVKVRVRWYYRPEESIGGRRQFHGVKELFLSDHFDVQSAHTIEGKCIVHSFKNYTKLE 112
           R+NVKV  RWYYRPEES+GGRRQFHG KELFLSDHFDVQSAHTIEGKCIVH+FKNYT+LE
Sbjct: 61  RNNVKVHCRWYYRPEESLGGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHTFKNYTRLE 120

Query: 113 NVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTI 172
           NVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTI
Sbjct: 121 NVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTI 180

Query: 173 EEAKKLEHFVCSECSSDDDMKKPQATFHVSPGSDIKV 209
           EEAKKL+HFVC+ECSSDDD+KK Q  F  SP  D+KV
Sbjct: 181 EEAKKLDHFVCAECSSDDDVKKSQNGFTSSPADDVKV 217


>AT4G39100.1 | Symbols: SHL1 | PHD finger family protein /
           bromo-adjacent homology (BAH) domain-containing protein
           | chr4:18218298-18220134 REVERSE LENGTH=228
          Length = 228

 Score =  282 bits (722), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 136/215 (63%), Positives = 161/215 (74%), Gaps = 5/215 (2%)

Query: 1   MAKTRPGRKDMDSYTIKGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDTR-SNVKVR 59
           M K +  RK + SY +K  NK ++ GD VLMR S+  KP YVARVE IE D R S+ KVR
Sbjct: 1   MPKQKAPRKQLKSYKLKHINKSIQEGDAVLMRSSEPGKPSYVARVEAIETDARGSHAKVR 60

Query: 60  VRWYYRPEESIGGRRQFHGVKELFLSDHFDVQSAHTIEGKCIVHSFKNYTKLENVGAEDY 119
           VRWYYRPEESIGGRRQFHG KE+FLSDHFD QSA TIEGKC VHSF +YTKL++VG +D+
Sbjct: 61  VRWYYRPEESIGGRRQFHGAKEVFLSDHFDFQSADTIEGKCKVHSFSSYTKLDSVGNDDF 120

Query: 120 YCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLE 179
           +CRFEY + TGAF PDRV V+CKCEMPYNPDDLMVQCE C +W+HP+C+G TIEEAKK +
Sbjct: 121 FCRFEYNSTTGAFDPDRVTVFCKCEMPYNPDDLMVQCEECSEWFHPSCIGTTIEEAKKPD 180

Query: 180 HFVCSECS-SDDDMKKPQATFHVSPGSDIKVEPKR 213
           +F C ECS    ++    +T   S   D KV  KR
Sbjct: 181 NFYCEECSPQQQNLHNSNST---SNNRDAKVNGKR 212


>AT4G04260.1 | Symbols:  | Bromo-adjacent homology (BAH)
           domain-containing protein | chr4:2054636-2055849 FORWARD
           LENGTH=193
          Length = 193

 Score =  269 bits (687), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 134/179 (74%), Positives = 146/179 (81%), Gaps = 2/179 (1%)

Query: 31  MRPSDTSKPPYVARVEKIEQDTRSNVKVRVRWYYRPEESIGGRRQFHGVKELFLSDHFDV 90
           MRPSD  K PYVARVEKIE D R+NVKV  RWYY PEES GGRRQ HG KELFLSDHFDV
Sbjct: 1   MRPSDAGKAPYVARVEKIEADARNNVKVHCRWYYCPEESHGGRRQLHGAKELFLSDHFDV 60

Query: 91  QSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPD 150
           QSAHTIEGKCIVH+FKNYT+LENVG EDYYC F+YKAATGAFTPDRVAVY KCEMPYN D
Sbjct: 61  QSAHTIEGKCIVHTFKNYTRLENVGVEDYYCIFDYKAATGAFTPDRVAVYYKCEMPYNSD 120

Query: 151 DLMVQCEGCKDWYHPACVGMTIEEAKKLEHFVCSECSSDDD-MKKPQATFHVSPGSDIK 208
           +LM +   C    H ACVG+TIEEAKKLEHFVC ECSSD+D +K+ Q  F  S  +D+K
Sbjct: 121 ELM-ELLLCHYRVHLACVGVTIEEAKKLEHFVCVECSSDEDGVKRFQNGFASSTTNDLK 178


>AT4G39100.2 | Symbols: SHL1 | PHD finger family protein /
           bromo-adjacent homology (BAH) domain-containing protein
           | chr4:18218712-18220134 REVERSE LENGTH=169
          Length = 169

 Score =  243 bits (620), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 113/163 (69%), Positives = 130/163 (79%), Gaps = 1/163 (0%)

Query: 1   MAKTRPGRKDMDSYTIKGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDTR-SNVKVR 59
           M K +  RK + SY +K  NK ++ GD VLMR S+  KP YVARVE IE D R S+ KVR
Sbjct: 1   MPKQKAPRKQLKSYKLKHINKSIQEGDAVLMRSSEPGKPSYVARVEAIETDARGSHAKVR 60

Query: 60  VRWYYRPEESIGGRRQFHGVKELFLSDHFDVQSAHTIEGKCIVHSFKNYTKLENVGAEDY 119
           VRWYYRPEESIGGRRQFHG KE+FLSDHFD QSA TIEGKC VHSF +YTKL++VG +D+
Sbjct: 61  VRWYYRPEESIGGRRQFHGAKEVFLSDHFDFQSADTIEGKCKVHSFSSYTKLDSVGNDDF 120

Query: 120 YCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDW 162
           +CRFEY + TGAF PDRV V+CKCEMPYNPDDLMVQCE C +W
Sbjct: 121 FCRFEYNSTTGAFDPDRVTVFCKCEMPYNPDDLMVQCEECSEW 163


>AT4G14700.1 | Symbols: ATORC1A, ORC1A | origin recognition complex
           1 | chr4:8422236-8424665 FORWARD LENGTH=809
          Length = 809

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 31  MRPSDTSKPPYVARVEKIEQDTRSNVK-VRVRWYYRPEESIGGRRQFHGVKELFLSDHFD 89
           M+    S   + AR+EK+ ++    V  +R RWY  PEE++ GR++ +  +EL+L++ F 
Sbjct: 235 MKEKLLSSDLWAARIEKLWKEVDDGVYWIRARWYMIPEETVLGRQRHNLKRELYLTNDFA 294

Query: 90  VQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAF 132
                 +   C V   K ++K  N G + + C +EY    G+F
Sbjct: 295 DIEMECVLRHCFVKCPKEFSKASNDGDDVFLCEYEYDVHWGSF 337


>AT4G11560.1 | Symbols:  | bromo-adjacent homology (BAH)
           domain-containing protein | chr4:7000095-7003445 REVERSE
           LENGTH=587
          Length = 587

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 29  VLMRPSDTSKPPYVARVEKIEQDTRSNVKVRVRWYYRPEESI---GGRRQFHGVKELFLS 85
           VL+ P D S+ PYVA ++ I Q    ++ +  +W+YRPEE+    GG  Q    +ELF S
Sbjct: 137 VLLVPEDKSQKPYVAIIKDITQTKDGSMMILGQWFYRPEEAEKRGGGNWQSSDTRELFYS 196

Query: 86  DHFDVQSAHTIEGKCIVHSFKNYTKL 111
            H D   A ++  +C+V+    + +L
Sbjct: 197 FHRDEVPAESVMHRCVVYFVPAHKQL 222


>AT4G12620.1 | Symbols: ORC1B, ATORC1B, UNE13 | origin of
           replication complex 1B | chr4:7459812-7462253 REVERSE
           LENGTH=813
          Length = 813

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 1/103 (0%)

Query: 31  MRPSDTSKPPYVARVEKIEQDTRSNVK-VRVRWYYRPEESIGGRRQFHGVKELFLSDHFD 89
           MR    S   + AR++K+ ++    V  +R RWY  PEE++ GR+  +  +EL+L++ F 
Sbjct: 238 MREKLLSGDLWAARIDKLWKEVDDGVYWIRARWYMIPEETVSGRQPHNLKRELYLTNDFA 297

Query: 90  VQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAF 132
                 I   C V   K ++K  N G + + C +EY     +F
Sbjct: 298 DIEMECILRHCSVKCPKEFSKASNDGDDVFLCEYEYDVHWRSF 340


>AT4G23120.1 | Symbols:  | Bromo-adjacent homology (BAH)
           domain-containing protein | chr4:12113308-12115523
           FORWARD LENGTH=360
          Length = 360

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 5/91 (5%)

Query: 27  DCVLMRPSDTSKPPYVARVEKI-EQDTRSNVKVRVRWYYRPEE---SIGGRRQFHGVKEL 82
           D VL+ P D  KP YVA ++ I  Q    +VK+ V+W YRPEE      G  +  G ++L
Sbjct: 63  DSVLLVPEDGEKP-YVAIIKDIYTQRKEGHVKLEVQWLYRPEEVEKKYVGNWKSKGSRDL 121

Query: 83  FLSDHFDVQSAHTIEGKCIVHSFKNYTKLEN 113
           F S H D   A +++  CIVH  +   ++ N
Sbjct: 122 FYSFHRDEVFAESVKDDCIVHFVQENKQIPN 152