Miyakogusa Predicted Gene

Lj0g3v0087579.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0087579.1 Non Chatacterized Hit- tr|I1KDQ3|I1KDQ3_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,52.73,4e-18,seg,NULL;
DUF3082,Protein of unknown function DUF3082,CUFF.4676.1
         (295 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15110.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   199   2e-51

>AT3G15110.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast
           thylakoid membrane; EXPRESSED IN: 20 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF3082
           (InterPro:IPR021434); Has 77 Blast hits to 77 proteins
           in 38 species: Archae - 0; Bacteria - 37; Metazoa - 0;
           Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes -
           1 (source: NCBI BLink). | chr3:5084394-5085823 REVERSE
           LENGTH=266
          Length = 266

 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/283 (43%), Positives = 161/283 (56%), Gaps = 28/283 (9%)

Query: 21  LPLTHHKPTLSSPFLYKPTSSI--LHHXXXXXXXXXXXXXWTWLTHLAAELSTSIDL-DA 77
           L L  H+   S P+  +PT  I  +H               + +  +A       D+ + 
Sbjct: 2   LVLQSHQCLFSLPYRLRPTRLISPIHSLSSFTRIRPGIIRLSAVKEIA-------DVAEV 54

Query: 78  EGEGPIEIPFPSTPS------IFDATDDPSPIQVASSVLLTGAISVFLFRSLRRRAKRVK 131
           E +GPIE+P  ST        IF  +DDP+P+Q+A+SVLLTGAI+VFL RS+RRRAKR K
Sbjct: 55  EEDGPIELPTSSTSPFSSTNSIFATSDDPTPLQLATSVLLTGAITVFLIRSVRRRAKRAK 114

Query: 132 ESQFRSSGVVKKSIQEEALDSLKALGSASIDA-KGPPSPFQTFXXXXXXXXXXXXFYKFA 190
           E  FRS+G  KKS++EEA+D+LKAL S  I+     PS  Q F             YKF 
Sbjct: 115 ELTFRSTGA-KKSLKEEAMDNLKALSSTPIEGGNSTPSAAQAFLGAIAAGVIALILYKFT 173

Query: 191 TTIEASLNKQTISDNFSVRQITIAIRTFVNGLTYLATFIFGLNSLGLFLYSGQLAIKSIA 250
            T+E+ LN+QTISDNFSVRQIT+ +RT +NG+ YLATF+FGLN+ GL LYSGQLA    +
Sbjct: 174 VTVESGLNRQTISDNFSVRQITVTVRTIINGICYLATFVFGLNAFGLLLYSGQLAFNEDS 233

Query: 251 GGSTEKETESKSVDQSSLSNSLDESPANNTELSSRKEEQSSND 293
                K T              D S  +N+E++   E+QSS D
Sbjct: 234 AEENMKATTQPG----------DSSSGDNSEVNKSNEDQSSGD 266