Miyakogusa Predicted Gene

Lj0g3v0087339.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0087339.1 Non Chatacterized Hit- tr|I1IR56|I1IR56_BRADI
Uncharacterized protein OS=Brachypodium distachyon GN=,31.68,3e-19,no
description,NULL; UBX,UBX; SUBFAMILY NOT NAMED,NULL; FAS-ASSOCIATED
PROTEIN,NULL; coiled-coil,NUL,CUFF.4662.1
         (191 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10790.1 | Symbols:  | UBX domain-containing protein | chr4:6...   159   1e-39
AT4G23040.1 | Symbols:  | Ubiquitin-like superfamily protein | c...    59   2e-09
AT4G11740.1 | Symbols: SAY1 | Ubiquitin-like superfamily protein...    55   2e-08

>AT4G10790.1 | Symbols:  | UBX domain-containing protein |
           chr4:6640752-6643035 REVERSE LENGTH=480
          Length = 480

 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/191 (43%), Positives = 109/191 (57%)

Query: 1   MIAMLQRVLEESSPTLVAARLDAXXXXXXXXXXXXQDAAYXXXXXXXXXXXXXXXXXXXX 60
           M+A+LQR++E+SSPTLV AR++A            QDAAY                    
Sbjct: 290 MLAILQRIVEDSSPTLVTARVEAEERRTNLRLREEQDAAYRAALEADQAREQQRQEEKER 349

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRQQKAESLGEEPAKGPNVTQVLVR 120
                                              +RQ+KA +LGEEP KGP+VTQVLVR
Sbjct: 350 LEREAAEAERKLKEEEEARERAAREAEERQAARVRMRQEKALALGEEPEKGPDVTQVLVR 409

Query: 121 FPTGERKERRFNNTVTIQSVYDYVDSLGCLEADSYSLVSNFPRVVYGQEKLTLSLKEAGL 180
           FP GERK R F +   IQ++YDYVDSLG L+ + YSL++NFPR VYG++K ++SLK+AGL
Sbjct: 410 FPNGERKGRMFKSETKIQTLYDYVDSLGLLDTEEYSLITNFPRTVYGRDKESMSLKDAGL 469

Query: 181 HPQASLFVELS 191
           HPQASLF+E++
Sbjct: 470 HPQASLFIEIN 480


>AT4G23040.1 | Symbols:  | Ubiquitin-like superfamily protein |
           chr4:12075672-12078622 REVERSE LENGTH=525
          Length = 525

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 100 KAESLGEEPAKGP-NVTQVLVRFPTGERKERRFNNTVTIQSVYDYVDSLGCLEADSYSLV 158
           K  SL +EP  G  N   + VR P G R  RRF  +  +QS++D++D    ++ ++Y LV
Sbjct: 432 KEASLPQEPPAGEENAITLQVRLPDGTRHGRRFFKSDKLQSLFDFIDICRVVKPNTYRLV 491

Query: 159 SNFPRVVYGQEKLTLSLKEAGL-HPQASLFVEL 190
             +PR  +G  + + +L + GL   Q +LF+EL
Sbjct: 492 RPYPRRAFGDGECSSTLNDIGLTSKQEALFLEL 524


>AT4G11740.1 | Symbols: SAY1 | Ubiquitin-like superfamily protein |
           chr4:7071955-7075256 FORWARD LENGTH=564
          Length = 564

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 2/93 (2%)

Query: 100 KAESLGEEP-AKGPNVTQVLVRFPTGERKERRFNNTVTIQSVYDYVDSLGCLEADSYSLV 158
           K  SL +EP A   N   +L+R P G R+ RRF  +  +Q++++++D    ++ ++Y LV
Sbjct: 471 KEASLPKEPQADEENAITLLIRMPDGTRRGRRFLKSDKLQTLFNFIDIARVVKPNTYRLV 530

Query: 159 SNFPRVVYGQEKLTLSLKEAGL-HPQASLFVEL 190
             +PR  +G  +   +L + GL   Q +LF+EL
Sbjct: 531 RPYPRHAFGDGESESTLNDLGLTSKQEALFLEL 563