Miyakogusa Predicted Gene

Lj0g3v0087139.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0087139.1 Non Chatacterized Hit- tr|K4D8X3|K4D8X3_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,66.1,0.000000000004,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY
NOT NAMED,NULL,CUFF.4645.1
         (390 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12070.1 | Symbols:  | unknown protein; INVOLVED IN: biologic...   494   e-140

>AT4G12070.1 | Symbols:  | unknown protein; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 30201 Blast hits to 17322 proteins in
           780 species: Archae - 12; Bacteria - 1396; Metazoa -
           17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
           Eukaryotes - 2996 (source: NCBI BLink). |
           chr4:7231941-7234272 FORWARD LENGTH=483
          Length = 483

 Score =  494 bits (1272), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 252/402 (62%), Positives = 292/402 (72%), Gaps = 22/402 (5%)

Query: 1   MVRVRRGPDELAELQACIVPNDSGGKKQLVLRSISDPNYVVGLVDRYEAECFELQASRST 60
           +VRVRRG D+ ++L ACIVPN+S GK+Q +LRSI DPNY VG  DR E++C  LQ SR +
Sbjct: 86  VVRVRRGSDDFSDLSACIVPNESAGKRQYMLRSIDDPNYTVGFSDRTESDCLGLQESRGS 145

Query: 61  RMVNELTRTKLQDGYVSYPWERRMQEMLPVPNSSNFLSILLLPKAS--DRVASKYNDLED 118
           RMV  L + KLQDGYVSYPWERRMQE LP+  SSNFLSIL LPKAS   R  S+YNDLED
Sbjct: 146 RMVEALVKAKLQDGYVSYPWERRMQEALPISGSSNFLSILFLPKASAYGRTGSRYNDLED 205

Query: 119 TLARANAWLNAGQASGVPVVFMNIQTESLLTKISGETASSTVNAGSLSDLSNVANVSLYG 178
           TLARANAWL+  QA+GVP+VFMNIQTESLLTKISGETAS+TVN  SLSDLSN+AN SLYG
Sbjct: 206 TLARANAWLSCSQANGVPIVFMNIQTESLLTKISGETASATVNTTSLSDLSNLANTSLYG 265

Query: 179 FEDYHGIDIGVVRAVRLWYAPVGGELSVEIKLREEDTKLGFAISRTEEGFIFISSVMHQE 238
           FEDYHG+DIGVVRAVRLW+AP+G E  +EIKL+++DTKLGF+ISRTEEGFI++SSV   E
Sbjct: 266 FEDYHGVDIGVVRAVRLWFAPLGVEFPLEIKLKDDDTKLGFSISRTEEGFIYVSSVTDHE 325

Query: 239 N--GPATRSGLSDLYKLATDTSRLLVVSRVSNQKVLPWMVSSTGAIRCYDTVSLSQKLSL 296
           +   PA RSGLS LY+ A   SR LVVSRV NQKVLPWMVSSTGAIRCYDTVSLSQKLSL
Sbjct: 326 DESAPAARSGLSSLYREAAKASRRLVVSRVGNQKVLPWMVSSTGAIRCYDTVSLSQKLSL 385

Query: 297 HRHTRVPIHLHVFLWDRALATSSGSSNRF-----------RAXXXXXXXXXXEVQVARHQ 345
           HRH +V I LHVFLWD +      S  R                        EV   R  
Sbjct: 386 HRHAKVHIGLHVFLWDSSATADFSSPPRSSSGGTHLLFSNETLDSTEFPRYGEVLPPRQV 445

Query: 346 DENQVLPLPSEASEPSDLSRLRLQRDTAGEASFRFHDFALSS 387
            + QV+PLP E          R +R+ AG ASF+F +   ++
Sbjct: 446 GDRQVMPLPDE-------DVFRFERENAGNASFKFQEIPFTN 480