Miyakogusa Predicted Gene

Lj0g3v0087059.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0087059.1 Non Chatacterized Hit- tr|I3SIQ2|I3SIQ2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.61,0,ARP2/3
COMPLEX 34 KDA SUBUNIT,Arp2/3 complex, 34kDa subunit p34-Arc;
P34-Arc,Arp2/3 complex, 34kDa s,CUFF.4635.1
         (256 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30825.1 | Symbols: ARPC2A, DIS2 | Arp2/3 complex, 34 kD subu...   356   8e-99
AT2G33385.2 | Symbols: arpc2b | actin-related protein C2B | chr2...   174   4e-44
AT2G33385.1 | Symbols: arpc2b | actin-related protein C2B | chr2...   164   5e-41

>AT1G30825.1 | Symbols: ARPC2A, DIS2 | Arp2/3 complex, 34 kD subunit
           p34-Arc | chr1:10961106-10962999 FORWARD LENGTH=318
          Length = 318

 Score =  356 bits (914), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 169/256 (66%), Positives = 204/256 (79%), Gaps = 4/256 (1%)

Query: 1   MILLQSHSRFLLQTLLNRAQNIEKGVELDHHWVEFDDVRYHIQVSMKNPHIXXXXXXXXX 60
           MILLQSHSRFLLQTLL RAQN++K VELD+ W+EFDDVRYH+QV+MKNP++         
Sbjct: 1   MILLQSHSRFLLQTLLTRAQNLDKAVELDYQWIEFDDVRYHVQVTMKNPNLLLLSVSLPN 60

Query: 61  XXXETIFVCGLPFGAIEAIKATYGGIVQILDPPKDGFNLTLKINLSKIPANQEQRHAFLV 120
              E +   GLP GAIEAIK TYG   QILDPP+DGF+LTLK+N SK+  ++E     L 
Sbjct: 61  PPPEAMSFDGLPLGAIEAIKTTYGTGFQILDPPRDGFSLTLKLNFSKVRPDEE----LLT 116

Query: 121 KVASVREVVLGAPLRVILKHLASRTVAPDMDPVVALVHRPKESFFLLPQADKVTVVYPMR 180
           K+AS+REVV+GAPL++I KHLASRTVAP++D +VA++HRP E+FFL+PQADKVTV +PMR
Sbjct: 117 KLASIREVVMGAPLKIIFKHLASRTVAPELDRLVAIMHRPNETFFLVPQADKVTVAFPMR 176

Query: 181 FNDSIDMVLATSFLQEFVEARRTAGLSNTPPCSWSHTPPLELKELPADALSANAGFVSFV 240
           F DS+D +LATSFL+EFVEARR A L+  P CSWS T P EL+  P + LSANAGFV+FV
Sbjct: 177 FKDSVDTILATSFLKEFVEARRAAALNTAPSCSWSPTAPQELEGAPKETLSANAGFVTFV 236

Query: 241 IFPRHVEGPKLDRTVW 256
           IFPRHVEG KLDRTVW
Sbjct: 237 IFPRHVEGKKLDRTVW 252


>AT2G33385.2 | Symbols: arpc2b | actin-related protein C2B |
           chr2:14147604-14149769 REVERSE LENGTH=374
          Length = 374

 Score =  174 bits (442), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 91/257 (35%), Positives = 147/257 (57%), Gaps = 3/257 (1%)

Query: 1   MILLQSHSRFLLQTLLNRAQNIEKGVELDHHWVEFDDVRYHIQVSMKNPHIXXXXXXXXX 60
           M  L+  S  L +TLL +    EK +E+D H+ EF  + YHI+ S+ +P+I         
Sbjct: 1   MAYLERASPTLKETLL-KIYRAEKPIEVDQHFHEFGSIEYHIKYSVSDPNIVHVSTSTLL 59

Query: 61  XXXETIFVCGLPFGAIEAIKATYGGIVQILDPPKDGFNLTLKINLSKIPANQEQRHAFLV 120
                + +  +     E IK    G++ I+DPP+ GF LTL +NL  IP  +E     + 
Sbjct: 60  ETQGAVTLKEISSYTYEVIKNIGVGVIDIVDPPRLGFQLTLGLNLDNIPRGKEA-IKIIT 118

Query: 121 KVASVREVVLGAPLRVILKHLASRTVAPDMDPV-VALVHRPKESFFLLPQADKVTVVYPM 179
           +++ ++ ++L + L+ +L+ L  +  +  ++ + + +V+ P E F++  Q +K+T V+PM
Sbjct: 119 RISELQAIILSSQLKEMLRSLNFQDDSRSINNMPIRIVYHPSEPFYVFKQPEKITAVFPM 178

Query: 180 RFNDSIDMVLATSFLQEFVEARRTAGLSNTPPCSWSHTPPLELKELPADALSANAGFVSF 239
            F D+ D+V+ATSF QE VE      +   P CSWS  PPL+L+  P   L+ N+GFVSF
Sbjct: 179 NFKDNSDVVIATSFFQELVEVGSQKDMGKAPQCSWSPIPPLQLRGEPVQDLTTNSGFVSF 238

Query: 240 VIFPRHVEGPKLDRTVW 256
            I  RH+EG +LD+TVW
Sbjct: 239 DITSRHIEGKRLDKTVW 255


>AT2G33385.1 | Symbols: arpc2b | actin-related protein C2B |
           chr2:14147604-14149769 REVERSE LENGTH=365
          Length = 365

 Score =  164 bits (415), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 89/257 (34%), Positives = 146/257 (56%), Gaps = 12/257 (4%)

Query: 1   MILLQSHSRFLLQTLLNRAQNIEKGVELDHHWVEFDDVRYHIQVSMKNPHIXXXXXXXXX 60
           M  L+  S  L +TLL +    EK +E+D H+ EF  + YHI+ S+ +P+I         
Sbjct: 1   MAYLERASPTLKETLL-KIYRAEKPIEVDQHFHEFGSIEYHIKYSVSDPNIVHVSTSTLL 59

Query: 61  XXXETIFVCGLPFGAIEAIKATYGGIVQILDPPKDGFNLTLKINLSKIPANQEQRHAFLV 120
                + +  +     E IK    G++ I+DPP+ GF LTL +NL  IP  +E     + 
Sbjct: 60  ETQGAVTLKEISSYTYEVIKNIGVGVIDIVDPPRLGFQLTLGLNLDNIPRGKEA-IKIIT 118

Query: 121 KVASVREVVLGAPLRVILKHLASRTVAPDMDPV-VALVHRPKESFFLLPQADKVTVVYPM 179
           +++ ++ ++L + L+ +L+ L  +  +  ++ + + +V+ P E F++  Q +K+T V+PM
Sbjct: 119 RISELQAIILSSQLKEMLRSLNFQDDSRSINNMPIRIVYHPSEPFYVFKQPEKITAVFPM 178

Query: 180 RFNDSIDMVLATSFLQEFVEARRTAGLSNTPPCSWSHTPPLELKELPADALSANAGFVSF 239
            F D+ D+V+ATSF Q+  +A         P CSWS  PPL+L+  P   L+ N+GFVSF
Sbjct: 179 NFKDNSDVVIATSFFQDMGKA---------PQCSWSPIPPLQLRGEPVQDLTTNSGFVSF 229

Query: 240 VIFPRHVEGPKLDRTVW 256
            I  RH+EG +LD+TVW
Sbjct: 230 DITSRHIEGKRLDKTVW 246