Miyakogusa Predicted Gene

Lj0g3v0086889.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0086889.1 tr|G7JD59|G7JD59_MEDTR F-box/LRR-repeat protein
OS=Medicago truncatula GN=MTR_4g006290 PE=4 SV=1,45.93,4e-19,SUBFAMILY
NOT NAMED,NULL; F-BOX/LEUCINE RICH REPEAT PROTEIN,NULL; RNI-like,NULL;
seg,NULL; F-box,F-b,CUFF.4623.1
         (217 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80630.1 | Symbols:  | RNI-like superfamily protein | chr1:30...   119   2e-27

>AT1G80630.1 | Symbols:  | RNI-like superfamily protein |
           chr1:30308879-30310615 REVERSE LENGTH=578
          Length = 578

 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 116/222 (52%), Gaps = 25/222 (11%)

Query: 5   IHLPEECWECVFRFLNHHHY--LESVSLVSKQFLSITNRIRSTLAIPDXXXXXXXXXXXX 62
           + LPEECWE + + ++   Y  LESVSLVS  FLSITNR+RST  + D            
Sbjct: 1   MDLPEECWELICKAIDEDDYRFLESVSLVSTLFLSITNRVRSTFVVTDRAVPLLNRHLLR 60

Query: 63  XXNLTSLDLTRFRGDLDALLLQISRYPLRRLTSLDVSHHPTFPANGLRGLAEKMKTLTSL 122
             NL  +  + F  DL+++LLQ+SR  L    S+DVS    FP         +MK +  L
Sbjct: 61  FRNLKRIRFSDFTQDLNSILLQVSRSGL-DFESVDVSQTRYFPDF-------EMKNVKEL 112

Query: 123 TCSHMGSLSIADILLITDCSPFLQELDLSFPKE---------VVHRGNNLPLALPKLLRK 173
            C  +G  S +D++ I    P L++LD+S+P           V+   +NL     K L K
Sbjct: 113 KCYGVGGFSDSDLVSIGVNFPLLEKLDISYPNSSPSRVSDSGVIELSSNL-----KGLLK 167

Query: 174 VNLSGESFIINDEELIRVCKNCEFLEELVIFECPLITQHCFR 215
           +N+SG SF I D+ LI + +NC  L E++  +C  I+  C +
Sbjct: 168 INISGNSF-ITDKSLIALSQNCLLLREIIFRDCDFISSDCIK 208