Miyakogusa Predicted Gene

Lj0g3v0085639.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0085639.2 Non Chatacterized Hit- tr|F6HKW5|F6HKW5_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,42.64,2e-17,
,CUFF.4523.2
         (263 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23540.1 | Symbols:  | ARM repeat superfamily protein | chr4:...   199   1e-51
AT2G34357.1 | Symbols:  | ARM repeat superfamily protein | chr2:...    61   8e-10

>AT4G23540.1 | Symbols:  | ARM repeat superfamily protein |
           chr4:12280547-12286420 REVERSE LENGTH=1131
          Length = 1131

 Score =  199 bits (506), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 116/266 (43%), Positives = 163/266 (61%), Gaps = 6/266 (2%)

Query: 1   MHENVSKALQILVNENKAALSPRKN--ELDLSAEHDSSLEFGMQPAYSKKAATRNLKSLT 58
           MHE V+ +LQ+LVN+NK    P  +  E    +E D++ E      YSKKA+T+N+K+L 
Sbjct: 591 MHEAVALSLQMLVNQNKGMPKPSTDMGEAKAISEEDATTELERGFHYSKKASTKNMKALA 650

Query: 59  SCSNRLLYILSDIFITSLPQMRISLKGAIRCLASITDSSVTKDVLMSLFKRLQFIDHEEE 118
           S S  LL  L D+F  S  ++    K AI CLAS  DSSV K +L+SL  +       E 
Sbjct: 651 SSSTELLQTLVDVFTVSGTEISADFKAAIGCLASTLDSSVRKKILISLLNKFDPAGESET 710

Query: 119 AEKLTSNSSKLDSEP---SDVKEYDQRCLMLEIASCLVEGANDNLIEIIYNLTIQSFQAT 175
             ++  ++  +D E    S  K   +R  +L++AS  VEGA ++LIE+IYNL  QSFQAT
Sbjct: 711 EGQVNQSNDSVDEEKENCSSTKTQLKRSAVLDLASSFVEGAKEDLIELIYNLVRQSFQAT 770

Query: 176 NESVQHEAYSTLSKILEEHPCFSSPRYMELIDLLHGLKPPTAVSTLRSRFACFHKLMVQT 235
           +E+  + AY TLS++L+EH  F +  + E+I++L   K P   ++ RSRFAC H LM   
Sbjct: 771 DEADLYGAYDTLSRVLQEHGWFCASHFAEVIEMLLSHKTPEDAASSRSRFACLHVLMAHG 830

Query: 236 VKISLEEEDNSKAFLILNEIILTLKD 261
           ++ S EEE N KAFLILNE+ILTLK+
Sbjct: 831 IQSSTEEE-NEKAFLILNEMILTLKE 855


>AT2G34357.1 | Symbols:  | ARM repeat superfamily protein |
           chr2:14499236-14505555 FORWARD LENGTH=1280
          Length = 1280

 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 118/275 (42%), Gaps = 32/275 (11%)

Query: 2   HENVSKALQILVNENKAALSPRKNELDLSAEHDSSLEFGMQPA---YSKKAATRNLKSLT 58
           H  +  +L IL+ +NK  +  ++        +D+S    MQ A   Y  + A  NLK L 
Sbjct: 590 HGIICASLNILIQQNKEVVEGKE-----VPTNDASP--AMQRATARYDSQHAAANLKVLR 642

Query: 59  SCSNRLLYILSDIFITSLPQMRISLKGAIRCLASITDSSVTKDVLMSLFKRLQFIDHEEE 118
            C+ +LL +LS IF         SL+ AI  LASI +    K V   LFK LQ      E
Sbjct: 643 LCAPKLLDVLSRIFHECSKDDGGSLQSAIGNLASIAEK---KTVSKLLFKTLQ------E 693

Query: 119 AEKLTSNSSKLDSEPSDVKEYDQ----------RCLMLEIASCLVEGANDNLIEIIYNLT 168
             + T  +   D  P    + D           R  + ++   L+ G +   ++ I++  
Sbjct: 694 LLEATKTAIAQDESPVSGMDVDNTADKNSSSNLRARLFDLLVSLLPGLDGQEVDTIFSSL 753

Query: 169 IQSFQATNESVQHEAYSTLSKILEEHPCFSSPRYMELIDLLHGLKPPTAVSTLRSRFACF 228
             + Q +   +Q +AY  LS IL+    F S    EL+ L+H +     VS  R +  C 
Sbjct: 754 KPAMQDSKGLIQKKAYKVLSVILKSSDGFVSKNLEELLVLMHNI---CHVSAKRHKLDCL 810

Query: 229 HKLMVQTVKISLEEEDNSKAFLILNEIILTLKDVS 263
           + L+    +    +E        L E+IL LK+V+
Sbjct: 811 YFLLAHASRTDDLKERKDIVSSFLPEVILALKEVN 845