Miyakogusa Predicted Gene

Lj0g3v0085579.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0085579.2 Non Chatacterized Hit- tr|K4B0H3|K4B0H3_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,43.51,2e-19,DUF1517,Protein of unknown function DUF1517;
seg,NULL,CUFF.4519.2
         (177 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G54520.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    82   3e-16

>AT1G54520.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
           growth stages; CONTAINS InterPro DOMAIN/s: Protein of
           unknown function DUF1517 (InterPro:IPR010903); Has 276
           Blast hits to 275 proteins in 83 species: Archae - 0;
           Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113;
           Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
           | chr1:20363565-20365874 FORWARD LENGTH=391
          Length = 391

 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 72/156 (46%), Gaps = 47/156 (30%)

Query: 9   KYFNQLSNEERGKFDEVTLVKRSSVNVFSNEDTLWNAKESINVPQKXXXXXXNGSGNEYI 68
           K FNQLS EERGKFDE               +TL N    +N  ++        SG    
Sbjct: 280 KRFNQLSIEERGKFDE---------------ETLVN----VNSIKRQSSKIRKASG---- 316

Query: 69  ALDIKESADESQKFEEEELLKVFGNEYIVVTILVAAKGTHKLPNNNGAEDLKKALQXXXX 128
                                 F NEYIVVTIL+AA+G HKLP  NG  DLK+AL     
Sbjct: 317 ----------------------FSNEYIVVTILMAAEGIHKLPPINGTTDLKEAL--LKL 352

Query: 129 XXXXXXXXXAGEVLWTPQKEDESLPGRKLLKDYPHL 164
                    A EVLWTPQ E ++L  R+LL+DYP L
Sbjct: 353 GSIPRNKIMAVEVLWTPQNEADALSERELLEDYPLL 388