Miyakogusa Predicted Gene

Lj0g3v0085579.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0085579.1 Non Chatacterized Hit- tr|B4WH57|B4WH57_9SYNE
Putative uncharacterized protein OS=Synechococcus sp.
,32.49,2e-18,DUF1517,Protein of unknown function DUF1517; seg,NULL;
PROKAR_LIPOPROTEIN,NULL,CUFF.4519.1
         (349 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G54520.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   133   2e-31

>AT1G54520.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
           growth stages; CONTAINS InterPro DOMAIN/s: Protein of
           unknown function DUF1517 (InterPro:IPR010903); Has 276
           Blast hits to 275 proteins in 83 species: Archae - 0;
           Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113;
           Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
           | chr1:20363565-20365874 FORWARD LENGTH=391
          Length = 391

 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/229 (39%), Positives = 117/229 (51%), Gaps = 49/229 (21%)

Query: 108 NTLCKLQVAVFGGNKGSSVQSDLTRIAKAADTSSREGVSHLLIETIEALDRQPSSLIAGY 167
            ++ KLQV + G   G ++Q D  R+A+++DTS+ EG+S++L E   AL R P   I+ Y
Sbjct: 209 TSVIKLQVGLLG--LGRTLQQDFNRLAESSDTSTPEGLSYVLTEATLALLRHPDYCISCY 266

Query: 168 SSVDLMKDREGVKKYFNQLSNEERGKFDEVTLVKRSSVNVFSNEDTLWNAKESINVPQKX 227
           SSVD+    E  +K FNQLS EERGKFDE TLV  +S+                   ++ 
Sbjct: 267 SSVDVKPSIEKGEKRFNQLSIEERGKFDEETLVNVNSI-------------------KRQ 307

Query: 228 XXXXXNGSGNEYIALDIKESADESQKFEEEELLKVFGNEYIVVTILVAAKGTHKLPNNNG 287
                  SG                          F NEYIVVTIL+AA+G HKLP  NG
Sbjct: 308 SSKIRKASG--------------------------FSNEYIVVTILMAAEGIHKLPPING 341

Query: 288 AEDLKKALQXXXXXXXXXXXXXAGEVLWTPQKEDESLPGRKLLKDYPHL 336
             DLK+AL              A EVLWTPQ E ++L  R+LL+DYP L
Sbjct: 342 TTDLKEAL--LKLGSIPRNKIMAVEVLWTPQNEADALSERELLEDYPLL 388